Wall clock time and date at job start Mon Mar 30 2020 02:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.81333 * 2 1 4 4 C 1.53019 * 109.62238 * 120.52157 * 2 1 3 5 5 C 1.50069 * 110.15525 * 70.27608 * 4 2 1 6 6 C 1.29439 * 124.07765 * 17.08952 * 5 4 2 7 7 C 1.50070 * 124.07574 * 359.55758 * 6 5 4 8 8 C 1.53029 * 110.14627 * 17.12907 * 7 6 5 9 9 H 1.08990 * 109.64357 * 70.45941 * 8 7 6 10 10 C 1.53000 * 109.64108 * 190.88236 * 8 7 6 11 11 O 1.42903 * 109.46726 * 294.99662 * 10 8 7 12 12 C 1.34928 * 116.99484 * 180.02562 * 11 10 8 13 13 H 1.07994 * 120.00342 * 0.02562 * 12 11 10 14 14 C 1.38636 * 119.99689 * 180.02562 * 12 11 10 15 15 N 1.31586 * 120.00188 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00177 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47377 * 89.99523 * 16 14 12 18 18 H 1.48501 * 109.47576 * 210.00117 * 16 14 12 19 19 H 1.48504 * 109.46886 * 329.99940 * 16 14 12 20 20 H 1.09002 * 109.47368 * 180.53075 * 1 2 3 21 21 H 1.09002 * 109.47465 * 300.52978 * 1 2 3 22 22 H 1.09006 * 109.47194 * 60.53352 * 1 2 3 23 23 H 1.09000 * 109.36355 * 310.05546 * 4 2 1 24 24 H 1.08994 * 109.22923 * 190.40766 * 4 2 1 25 25 H 1.07995 * 117.95995 * 197.11877 * 5 4 2 26 26 H 1.07999 * 117.96346 * 179.53323 * 6 5 4 27 27 H 1.09001 * 109.35976 * 256.92301 * 7 6 5 28 28 H 1.08997 * 109.35724 * 137.33510 * 7 6 5 29 29 H 1.09002 * 109.47398 * 54.99906 * 10 8 7 30 30 H 1.09001 * 109.47194 * 175.00087 * 10 8 7 31 31 H 0.96996 * 120.00124 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8994 1.0254 0.0000 4 6 2.0439 -0.7320 1.2416 5 6 1.7697 -2.2028 1.1252 6 6 1.4812 -2.8011 0.0143 7 6 1.3712 -2.1060 -1.3112 8 6 2.0457 -0.7340 -1.2443 9 1 3.1262 -0.8597 -1.1778 10 6 1.6978 0.0717 -2.4976 11 8 2.2589 -0.5677 -3.6458 12 6 2.0431 0.0202 -4.8410 13 1 1.4686 0.9329 -4.8979 14 6 2.5587 -0.5475 -5.9959 15 7 3.2582 -1.6598 -5.9266 16 14 2.2605 0.2667 -7.6504 17 1 3.3548 1.2302 -7.9325 18 1 2.2273 -0.7697 -8.7134 19 1 0.9623 0.9871 -7.6208 20 1 -0.3634 -1.0276 0.0095 21 1 -0.3634 0.5220 0.8852 22 1 -0.3634 0.5055 -0.8948 23 1 1.5419 -0.3397 2.1260 24 1 3.1178 -0.5709 1.3345 25 1 1.8154 -2.7991 2.0245 26 1 1.3093 -3.8670 0.0429 27 1 0.3192 -1.9794 -1.5666 28 1 1.8568 -2.7103 -2.0774 29 1 0.6145 0.1265 -2.6053 30 1 2.1053 1.0786 -2.4070 31 1 3.6193 -2.0568 -6.7346 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026515650.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:57 Heat of formation + Delta-G solvation = -59.877487 kcal Electronic energy + Delta-G solvation = -12569.749415 eV Core-core repulsion = 10429.396353 eV Total energy + Delta-G solvation = -2140.353062 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.40999 -37.94303 -34.11053 -33.12279 -32.02018 -28.45209 -26.96912 -25.85334 -23.25430 -21.37750 -19.67791 -18.02163 -17.44431 -17.02077 -15.96074 -15.84733 -15.27183 -14.96118 -14.59363 -14.02999 -13.70772 -13.47057 -13.36964 -12.79643 -12.70713 -12.66595 -12.23354 -12.10520 -11.70724 -11.47782 -11.21072 -11.07998 -10.81713 -10.13873 -9.81190 -8.18282 -5.88092 1.38140 1.45189 1.47140 1.54353 2.32610 3.14104 3.57314 3.77930 3.84321 4.24735 4.31751 4.37993 4.49588 4.55134 4.58134 4.67552 4.82262 4.86088 4.93135 5.07599 5.13365 5.15192 5.21612 5.24820 5.32214 5.42230 5.57900 5.85062 6.12993 6.20556 7.24314 8.06988 9.06703 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.066757 B = 0.008212 C = 0.007723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.329920 B = 3408.919784 C = 3624.867409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 H 0.077 0.923 4 C -0.083 4.083 5 C -0.150 4.150 6 C -0.165 4.165 7 C -0.077 4.077 8 C -0.072 4.072 9 H 0.053 0.947 10 C 0.074 3.926 11 O -0.335 6.335 12 C -0.381 4.381 13 H 0.070 0.930 14 C -0.043 4.043 15 N -0.939 5.939 16 Si 1.006 2.994 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.259 1.259 20 H 0.056 0.944 21 H 0.075 0.925 22 H 0.043 0.957 23 H 0.098 0.902 24 H 0.076 0.924 25 H 0.125 0.875 26 H 0.109 0.891 27 H 0.067 0.933 28 H 0.039 0.961 29 H 0.028 0.972 30 H 0.022 0.978 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.929 2.438 13.114 14.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.100 4.100 3 H 0.096 0.904 4 C -0.119 4.119 5 C -0.168 4.168 6 C -0.183 4.183 7 C -0.114 4.114 8 C -0.091 4.091 9 H 0.072 0.928 10 C -0.003 4.003 11 O -0.251 6.251 12 C -0.460 4.460 13 H 0.087 0.913 14 C -0.236 4.236 15 N -0.584 5.584 16 Si 0.828 3.172 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.183 1.183 20 H 0.075 0.925 21 H 0.094 0.906 22 H 0.062 0.938 23 H 0.116 0.884 24 H 0.094 0.906 25 H 0.143 0.857 26 H 0.127 0.873 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.040 0.960 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.759 2.162 13.056 14.064 hybrid contribution -0.018 0.230 -1.116 1.140 sum -4.777 2.393 11.940 13.081 Atomic orbital electron populations 1.21895 0.94368 1.02175 1.01816 1.21155 0.96743 0.98998 0.93133 0.90435 1.20546 1.01501 0.92302 0.97593 1.22237 0.99898 0.96925 0.97768 1.22089 1.02439 0.99863 0.93932 1.20284 1.00096 0.95344 0.95677 1.21110 0.99414 0.95271 0.93282 0.92846 1.22463 0.95909 0.94786 0.87137 1.85573 1.75172 1.51140 1.13199 1.21343 1.32970 1.07543 0.84099 0.91252 1.26253 0.97466 0.97387 1.02501 1.70204 1.37810 1.21071 1.29275 0.84754 0.79004 0.77457 0.75984 1.19473 1.20231 1.18335 0.92503 0.90565 0.93838 0.88354 0.90577 0.85694 0.87319 0.91491 0.94219 0.95423 0.96003 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 8.32 71.98 0.60 -3.12 16 2 C -0.08 -2.29 2.71 -10.66 -0.03 -2.32 16 3 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.08 -1.87 5.56 29.66 0.16 -1.71 16 5 C -0.15 -3.64 9.40 27.04 0.25 -3.39 16 6 C -0.17 -4.87 9.15 27.04 0.25 -4.62 16 7 C -0.08 -2.92 4.60 29.66 0.14 -2.78 16 8 C -0.07 -2.77 2.27 -10.65 -0.02 -2.79 16 9 H 0.05 2.23 8.13 -2.39 -0.02 2.21 16 10 C 0.07 3.45 5.11 71.98 0.37 3.81 16 11 O -0.33 -20.40 9.52 -81.98 -0.78 -21.18 16 12 C -0.38 -23.45 9.89 67.91 0.67 -22.78 16 13 H 0.07 3.98 7.77 -2.91 -0.02 3.96 16 14 C -0.04 -2.62 5.49 84.82 0.47 -2.16 16 15 N -0.94 -61.46 13.67 21.61 0.30 -61.17 16 16 Si 1.01 46.25 29.55 68.60 2.03 48.28 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 20 H 0.06 1.50 5.71 -2.39 -0.01 1.49 16 21 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.04 1.21 6.78 -2.38 -0.02 1.20 16 23 H 0.10 1.68 8.11 -2.39 -0.02 1.66 16 24 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 26 H 0.11 2.89 8.06 -2.91 -0.02 2.87 16 27 H 0.07 2.51 6.87 -2.39 -0.02 2.50 16 28 H 0.04 1.81 8.10 -2.39 -0.02 1.79 16 29 H 0.03 1.25 6.84 -2.39 -0.02 1.23 16 30 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -72.06 251.87 5.48 -66.59 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.08 Total: 9.34 kcal Atomic # 6 Polarization: -44.71 SS G_CDS: 2.85 Total: -41.85 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: 0.30 Total: -61.17 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.78 Total: -21.18 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -72.06 5.48 -66.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026515650.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.708 kcal (2) G-P(sol) polarization free energy of solvation -72.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds