Wall clock time and date at job start Mon Mar 30 2020 02:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30522 * 1 3 3 Si 1.86801 * 119.99615 * 2 1 4 4 H 1.48504 * 109.46632 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47233 * 299.99834 * 3 2 1 6 6 H 1.48495 * 109.47162 * 60.00377 * 3 2 1 7 7 C 1.40459 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99798 * 180.02562 * 7 2 1 9 9 C 1.41022 * 120.00121 * 359.97438 * 7 2 1 10 10 O 1.21436 * 120.00074 * 0.02562 * 9 7 2 11 11 C 1.50696 * 120.00077 * 180.02562 * 9 7 2 12 12 C 1.53002 * 109.47344 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.46817 * 64.99877 * 12 11 9 14 14 C 1.52999 * 109.47317 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.47159 * 300.00546 * 14 13 12 16 16 C 1.52997 * 109.47452 * 59.99536 * 15 14 13 17 17 C 1.53000 * 109.47233 * 184.99683 * 12 11 9 18 18 H 0.96996 * 120.00184 * 359.97438 * 1 2 3 19 19 H 1.09008 * 109.47224 * 59.99908 * 11 9 7 20 20 H 1.08997 * 109.47214 * 299.99902 * 11 9 7 21 21 H 1.09002 * 109.47070 * 305.00057 * 12 11 9 22 22 H 1.08996 * 109.47853 * 300.00202 * 13 12 11 23 23 H 1.09002 * 109.47153 * 60.00231 * 13 12 11 24 24 H 1.09000 * 109.47486 * 180.02562 * 14 13 12 25 25 H 1.09002 * 109.46716 * 60.00091 * 14 13 12 26 26 H 1.09002 * 109.46935 * 299.99411 * 15 14 13 27 27 H 1.09001 * 109.46812 * 179.97438 * 15 14 13 28 28 H 1.08993 * 109.47194 * 179.97438 * 16 15 14 29 29 H 1.09002 * 109.46695 * 59.99734 * 16 15 14 30 30 H 1.08992 * 109.47399 * 300.00166 * 17 12 11 31 31 H 1.09004 * 109.46724 * 60.00652 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 3.6992 1.3464 0.0006 5 1 1.8804 2.3965 -1.2125 6 1 1.8804 2.3964 1.2125 7 6 2.0075 -1.2164 -0.0005 8 1 3.0875 -1.2163 -0.0001 9 6 1.3025 -2.4377 -0.0005 10 8 0.0881 -2.4378 -0.0005 11 6 2.0560 -3.7428 -0.0005 12 6 1.0618 -4.9058 0.0001 13 6 0.2665 -4.8975 -1.3069 14 6 -0.7272 -6.0608 -1.3067 15 6 0.0342 -7.3820 -1.1812 16 6 0.8294 -7.3903 0.1258 17 6 1.8227 -6.2272 0.1257 18 1 -0.4850 0.8400 0.0004 19 1 2.6827 -3.8005 0.8895 20 1 2.6826 -3.8005 -0.8905 21 1 0.3780 -4.7987 0.8422 22 1 -0.2756 -3.9562 -1.3966 23 1 0.9504 -5.0045 -2.1490 24 1 -1.2935 -6.0552 -2.2380 25 1 -1.4111 -5.9542 -0.4646 26 1 0.7180 -7.4886 -2.0233 27 1 -0.6739 -8.2107 -1.1806 28 1 1.3715 -8.3316 0.2154 29 1 0.1455 -7.2836 0.9679 30 1 2.5065 -6.3342 -0.7162 31 1 2.3892 -6.2330 1.0570 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034939689.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:47 Heat of formation + Delta-G solvation = -100.408545 kcal Electronic energy + Delta-G solvation = -12613.225469 eV Core-core repulsion = 10471.114849 eV Total energy + Delta-G solvation = -2142.110620 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.01476 -38.16941 -34.77899 -33.15442 -31.50328 -29.67327 -27.10048 -23.40663 -22.83606 -20.93065 -20.42943 -18.30243 -17.09376 -16.22152 -15.62212 -15.43271 -15.12531 -14.80098 -14.50800 -13.99665 -13.49656 -13.12758 -12.95355 -12.74492 -12.61839 -12.24544 -12.12103 -11.98268 -11.89174 -11.67752 -11.25410 -11.01274 -10.86160 -10.75457 -9.38295 -8.22979 -7.04908 1.32934 1.36396 1.54086 2.21663 2.23693 3.42606 3.85622 3.94578 3.99593 4.33161 4.40330 4.60992 4.62791 4.66795 4.73173 4.85699 4.90418 5.07579 5.10655 5.14666 5.21919 5.23246 5.30625 5.40183 5.44246 5.49283 5.69369 5.77206 6.01244 6.76132 6.88804 8.33771 8.57198 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.077995 B = 0.008387 C = 0.007879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.909493 B = 3337.689063 C = 3552.739376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.026 3.974 3 Si 0.991 3.009 4 H -0.249 1.249 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.339 3.661 10 O -0.581 6.581 11 C -0.148 4.148 12 C -0.064 4.064 13 C -0.113 4.113 14 C -0.115 4.115 15 C -0.111 4.111 16 C -0.116 4.116 17 C -0.109 4.109 18 H 0.279 0.721 19 H 0.072 0.928 20 H 0.072 0.928 21 H 0.035 0.965 22 H 0.039 0.961 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.066 -9.300 -1.384 10.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.192 4.192 3 Si 0.810 3.190 4 H -0.171 1.171 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.605 4.605 8 H 0.099 0.901 9 C 0.236 3.764 10 O -0.474 6.474 11 C -0.186 4.186 12 C -0.083 4.083 13 C -0.151 4.151 14 C -0.152 4.152 15 C -0.149 4.149 16 C -0.153 4.153 17 C -0.146 4.146 18 H 0.089 0.911 19 H 0.090 0.910 20 H 0.091 0.909 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.329 -9.283 -1.384 9.958 hybrid contribution 0.178 1.082 0.087 1.100 sum 3.507 -8.201 -1.296 9.013 Atomic orbital electron populations 1.70097 1.09748 1.29416 1.32910 1.27215 0.95461 1.05410 0.91129 0.85081 0.79538 0.75511 0.78905 1.17150 1.18943 1.18954 1.21431 0.95790 0.93402 1.49848 0.90134 1.20285 0.88938 0.90292 0.76870 1.90318 1.17284 1.89853 1.49924 1.21958 0.99035 0.95889 1.01716 1.20773 0.96053 0.94168 0.97262 1.21550 0.98142 0.98518 0.96864 1.21501 0.97599 0.95138 1.00984 1.21519 0.99070 0.96221 0.98073 1.21520 0.97904 0.98216 0.97664 1.21583 0.97841 0.93254 1.01946 0.91069 0.90992 0.90911 0.94614 0.94188 0.92878 0.91943 0.93640 0.91413 0.90577 0.89872 0.92934 0.91391 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.87 11.72 21.91 0.26 -47.62 16 2 C 0.03 1.46 5.50 85.43 0.47 1.93 16 3 Si 0.99 40.64 29.56 68.60 2.03 42.66 16 4 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 5 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.57 -33.00 9.22 23.49 0.22 -32.78 16 8 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 9 C 0.34 19.70 6.62 26.37 0.17 19.87 16 10 O -0.58 -38.04 12.49 -3.51 -0.04 -38.08 16 11 C -0.15 -6.70 5.05 29.85 0.15 -6.55 16 12 C -0.06 -2.59 1.84 -10.79 -0.02 -2.61 16 13 C -0.11 -4.62 4.94 30.59 0.15 -4.47 16 14 C -0.11 -3.75 5.92 30.60 0.18 -3.57 16 15 C -0.11 -2.80 5.92 30.60 0.18 -2.62 16 16 C -0.12 -2.93 5.92 30.58 0.18 -2.74 16 17 C -0.11 -3.26 5.20 30.58 0.16 -3.10 16 18 H 0.28 15.08 8.29 -92.71 -0.77 14.32 16 19 H 0.07 3.02 8.14 -2.38 -0.02 3.00 16 20 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 21 H 0.04 1.64 7.96 -2.39 -0.02 1.62 16 22 H 0.04 2.04 5.95 -2.39 -0.01 2.02 16 23 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -69.61 250.84 5.17 -64.44 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 1.08 Total: 15.25 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 1.85 Total: -36.65 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.26 Total: -47.62 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.04 Total: -38.08 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.66 kcal Total: -69.61 5.17 -64.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034939689.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.972 kcal (2) G-P(sol) polarization free energy of solvation -69.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds