Wall clock time and date at job start Mon Mar 30 2020 01:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47208 * 2 1 4 4 N 1.33370 * 125.44617 * 90.02285 * 3 2 1 5 5 C 1.31578 * 109.69743 * 179.97438 * 4 3 2 6 6 N 1.38330 * 126.07378 * 179.97438 * 5 4 3 7 7 N 1.34991 * 107.85200 * 0.02562 * 5 4 3 8 8 C 1.46500 * 126.82824 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.46944 * 90.00016 * 8 7 5 10 10 H 1.07999 * 120.00202 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99746 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99573 * 0.27650 * 11 9 8 13 13 Si 1.86800 * 119.99781 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46758 * 89.99934 * 13 11 9 15 15 H 1.48499 * 109.47026 * 209.99782 * 13 11 9 16 16 H 1.48496 * 109.47474 * 329.99818 * 13 11 9 17 17 N 1.30590 * 125.44648 * 270.35747 * 3 2 1 18 18 H 1.08998 * 109.46963 * 179.97438 * 1 2 3 19 19 H 1.08999 * 109.46854 * 300.00172 * 1 2 3 20 20 H 1.09000 * 109.47074 * 59.99572 * 1 2 3 21 21 H 1.09004 * 109.47265 * 240.00417 * 2 1 3 22 22 H 1.08996 * 109.47212 * 119.99680 * 2 1 3 23 23 H 0.96999 * 120.00224 * 180.02562 * 6 5 4 24 24 H 0.96999 * 120.00221 * 0.02689 * 6 5 4 25 25 H 1.09000 * 109.46609 * 330.00198 * 8 7 5 26 26 H 1.08999 * 109.46486 * 210.00277 * 8 7 5 27 27 H 0.97001 * 120.00651 * 359.71956 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2906 2.1499 1.0865 5 6 2.7131 3.3437 0.7294 6 7 3.0756 4.3689 1.5844 7 7 2.7289 3.3907 -0.6196 8 6 3.1299 4.5260 -1.4541 9 6 4.6069 4.4416 -1.7410 10 1 5.1888 3.6243 -1.3414 11 6 5.2156 5.4085 -2.5130 12 7 4.5081 6.4072 -2.9942 13 14 7.0466 5.3042 -2.8680 14 1 7.2657 4.5251 -4.1131 15 1 7.5966 6.6731 -3.0374 16 1 7.7329 4.6316 -1.7359 17 7 2.2785 2.1370 -1.0638 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 1.8934 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 3.3758 5.2179 1.2239 24 1 3.0297 4.2388 2.5445 25 1 2.9143 5.4567 -0.9293 26 1 2.5755 4.5010 -2.3922 27 1 3.5574 6.4615 -2.8096 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054404626.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:07 Heat of formation + Delta-G solvation = 70.395910 kcal Electronic energy + Delta-G solvation = -12142.995169 eV Core-core repulsion = 9937.043594 eV Total energy + Delta-G solvation = -2205.951576 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.13699 -35.10533 -33.92017 -32.93393 -31.44312 -28.85624 -26.68592 -23.97913 -22.82977 -20.51678 -19.79645 -17.42316 -16.37161 -15.94981 -15.20939 -14.69252 -13.90308 -13.72066 -13.60978 -12.90163 -12.29820 -12.07730 -11.49784 -11.22021 -11.02814 -10.80495 -10.67696 -10.45713 -10.23958 -9.55082 -9.12596 -8.64506 -8.44889 -7.59530 -6.65975 -4.42199 2.70266 3.13623 3.33506 3.34810 3.52135 3.72295 4.08744 4.34764 5.03989 5.08014 5.24571 5.58833 5.67895 5.76973 6.03915 6.23768 6.40127 6.50038 6.60504 6.95749 7.22024 7.42947 7.61765 7.89028 8.00509 8.28294 8.51160 9.10078 9.27412 10.71084 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.050022 B = 0.009213 C = 0.008728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.618493 B = 3038.520656 C = 3207.162248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.021 4.021 3 C 0.217 3.783 4 N -0.602 5.602 5 C 0.519 3.481 6 N -0.828 5.828 7 N -0.371 5.371 8 C 0.251 3.749 9 C -0.617 4.617 10 H 0.058 0.942 11 C 0.027 3.973 12 N -0.901 5.901 13 Si 1.079 2.921 14 H -0.284 1.284 15 H -0.281 1.281 16 H -0.287 1.287 17 N -0.324 5.324 18 H 0.059 0.941 19 H 0.056 0.944 20 H 0.055 0.945 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.413 0.587 24 H 0.413 0.587 25 H 0.036 0.964 26 H 0.044 0.956 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.885 -5.700 6.827 9.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 C -0.066 4.066 4 N -0.343 5.343 5 C 0.153 3.847 6 N -0.385 5.385 7 N -0.166 5.166 8 C 0.131 3.869 9 C -0.655 4.655 10 H 0.076 0.924 11 C -0.179 4.179 12 N -0.536 5.536 13 Si 0.906 3.094 14 H -0.210 1.210 15 H -0.206 1.206 16 H -0.213 1.213 17 N -0.155 5.155 18 H 0.078 0.922 19 H 0.075 0.925 20 H 0.074 0.926 21 H 0.099 0.901 22 H 0.101 0.899 23 H 0.244 0.756 24 H 0.244 0.756 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.764 -5.235 5.499 8.080 hybrid contribution -0.973 -0.063 1.015 1.407 sum -3.736 -5.298 6.514 9.190 Atomic orbital electron populations 1.21681 0.94535 1.01453 1.02335 1.19697 0.95771 0.87449 1.03168 1.23686 0.99266 0.97560 0.86127 1.70366 1.31489 1.01944 1.30540 1.20114 0.93411 0.89171 0.81980 1.40882 1.77006 1.13403 1.07200 1.50285 1.50475 1.12218 1.03587 1.19610 0.97280 0.79744 0.90252 1.22200 0.92270 1.13635 1.37408 0.92372 1.25929 1.07229 0.91997 0.92706 1.70819 1.09261 1.30654 1.42838 0.83389 0.73265 0.76291 0.76489 1.21049 1.20637 1.21318 1.77873 1.24113 0.91456 1.22081 0.92186 0.92468 0.92586 0.90140 0.89921 0.75555 0.75599 0.94618 0.93809 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.89 37.16 0.37 -1.49 15 2 C -0.02 -0.32 6.56 -27.88 -0.18 -0.50 15 3 C 0.22 4.54 7.39 -156.84 -1.16 3.38 15 4 N -0.60 -12.88 11.23 -11.36 -0.13 -13.00 15 5 C 0.52 11.23 9.10 -320.79 -2.92 8.31 15 6 N -0.83 -13.94 9.06 30.04 0.27 -13.67 15 7 N -0.37 -8.99 3.63 -63.12 -0.23 -9.22 15 8 C 0.25 6.39 5.37 -5.20 -0.03 6.36 15 9 C -0.62 -17.11 9.39 -34.44 -0.32 -17.43 15 10 H 0.06 1.70 7.81 -52.49 -0.41 1.29 15 11 C 0.03 0.74 5.46 -17.82 -0.10 0.64 15 12 N -0.90 -25.76 13.65 55.43 0.76 -25.01 15 13 Si 1.08 24.53 29.90 -169.99 -5.08 19.45 15 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 15 H -0.28 -6.26 7.11 56.52 0.40 -5.85 15 16 H -0.29 -6.31 7.11 56.52 0.40 -5.91 15 17 N -0.32 -7.77 12.68 32.43 0.41 -7.36 15 18 H 0.06 0.61 8.14 -51.93 -0.42 0.19 15 19 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.08 1.16 8.14 -51.93 -0.42 0.73 15 22 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.41 6.69 8.13 -40.82 -0.33 6.36 15 24 H 0.41 5.59 8.95 -40.82 -0.37 5.23 15 25 H 0.04 0.87 7.40 -51.93 -0.38 0.48 15 26 H 0.04 1.18 8.01 -51.93 -0.42 0.77 15 27 H 0.27 7.54 7.22 -40.82 -0.29 7.25 15 LS Contribution 242.89 15.07 3.66 3.66 Total: -1.00 -32.06 242.89 -7.79 -39.85 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -3.11 Total: 6.04 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -4.34 Total: -0.74 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: 1.08 Total: -68.26 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.08 Total: 19.45 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -32.06 -7.79 -39.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054404626.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.245 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds