Wall clock time and date at job start Mon Mar 30 2020 01:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47208 * 2 1 4 4 N 1.33370 * 125.44617 * 90.02285 * 3 2 1 5 5 C 1.31578 * 109.69743 * 179.97438 * 4 3 2 6 6 N 1.38330 * 126.07378 * 179.97438 * 5 4 3 7 7 N 1.34991 * 107.85200 * 0.02562 * 5 4 3 8 8 C 1.46500 * 126.82824 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.46944 * 90.00016 * 8 7 5 10 10 H 1.07999 * 120.00202 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99746 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99573 * 0.27650 * 11 9 8 13 13 Si 1.86800 * 119.99781 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46758 * 89.99934 * 13 11 9 15 15 H 1.48499 * 109.47026 * 209.99782 * 13 11 9 16 16 H 1.48496 * 109.47474 * 329.99818 * 13 11 9 17 17 N 1.30590 * 125.44648 * 270.35747 * 3 2 1 18 18 H 1.08998 * 109.46963 * 179.97438 * 1 2 3 19 19 H 1.08999 * 109.46854 * 300.00172 * 1 2 3 20 20 H 1.09000 * 109.47074 * 59.99572 * 1 2 3 21 21 H 1.09004 * 109.47265 * 240.00417 * 2 1 3 22 22 H 1.08996 * 109.47212 * 119.99680 * 2 1 3 23 23 H 0.96999 * 120.00224 * 180.02562 * 6 5 4 24 24 H 0.96999 * 120.00221 * 0.02689 * 6 5 4 25 25 H 1.09000 * 109.46609 * 330.00198 * 8 7 5 26 26 H 1.08999 * 109.46486 * 210.00277 * 8 7 5 27 27 H 0.97001 * 120.00651 * 359.71956 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2906 2.1499 1.0865 5 6 2.7131 3.3437 0.7294 6 7 3.0756 4.3689 1.5844 7 7 2.7289 3.3907 -0.6196 8 6 3.1299 4.5260 -1.4541 9 6 4.6069 4.4416 -1.7410 10 1 5.1888 3.6243 -1.3414 11 6 5.2156 5.4085 -2.5130 12 7 4.5081 6.4072 -2.9942 13 14 7.0466 5.3042 -2.8680 14 1 7.2657 4.5251 -4.1131 15 1 7.5966 6.6731 -3.0374 16 1 7.7329 4.6316 -1.7359 17 7 2.2785 2.1370 -1.0638 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 1.8934 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 3.3758 5.2179 1.2239 24 1 3.0297 4.2388 2.5445 25 1 2.9143 5.4567 -0.9293 26 1 2.5755 4.5010 -2.3922 27 1 3.5574 6.4615 -2.8096 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054404626.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:07 Heat of formation + Delta-G solvation = 50.202004 kcal Electronic energy + Delta-G solvation = -12143.870843 eV Core-core repulsion = 9937.043594 eV Total energy + Delta-G solvation = -2206.827249 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.82214 -36.79301 -35.73783 -34.45653 -33.10428 -30.55933 -28.54459 -25.68543 -24.49725 -22.22119 -21.34813 -19.43751 -18.08430 -17.44267 -16.92816 -16.36910 -15.69499 -15.17684 -14.92595 -14.74716 -14.17084 -13.45658 -13.42711 -12.79144 -12.56085 -12.39770 -12.01560 -11.98505 -11.95814 -11.45867 -10.83916 -10.73196 -10.31745 -9.25772 -8.83856 -6.63665 1.00217 1.43612 1.50539 1.56111 1.77050 2.09006 2.44597 2.55996 2.95860 3.61002 3.78073 4.30533 4.44020 4.47795 4.56680 4.75241 5.01922 5.12960 5.32454 5.33870 5.50094 5.58822 5.74115 5.94319 6.28645 6.48509 6.57062 7.13220 7.46167 8.52433 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.050022 B = 0.009213 C = 0.008728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.618493 B = 3038.520656 C = 3207.162248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.023 4.023 3 C 0.223 3.777 4 N -0.608 5.608 5 C 0.515 3.485 6 N -0.807 5.807 7 N -0.396 5.396 8 C 0.263 3.737 9 C -0.627 4.627 10 H 0.038 0.962 11 C -0.012 4.012 12 N -0.917 5.917 13 Si 1.123 2.877 14 H -0.276 1.276 15 H -0.271 1.271 16 H -0.276 1.276 17 N -0.370 5.370 18 H 0.096 0.904 19 H 0.051 0.949 20 H 0.041 0.959 21 H 0.090 0.910 22 H 0.103 0.897 23 H 0.418 0.582 24 H 0.430 0.570 25 H 0.046 0.954 26 H 0.020 0.980 27 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.511 -6.504 7.716 10.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.063 4.063 3 C -0.060 4.060 4 N -0.350 5.350 5 C 0.149 3.851 6 N -0.366 5.366 7 N -0.191 5.191 8 C 0.142 3.858 9 C -0.665 4.665 10 H 0.057 0.943 11 C -0.212 4.212 12 N -0.552 5.552 13 Si 0.944 3.056 14 H -0.202 1.202 15 H -0.196 1.196 16 H -0.201 1.201 17 N -0.201 5.201 18 H 0.115 0.885 19 H 0.070 0.930 20 H 0.060 0.940 21 H 0.109 0.891 22 H 0.121 0.879 23 H 0.250 0.750 24 H 0.264 0.736 25 H 0.064 0.936 26 H 0.038 0.962 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.411 -6.035 6.433 9.144 hybrid contribution -1.154 0.143 0.813 1.419 sum -3.566 -5.892 7.246 9.997 Atomic orbital electron populations 1.21635 0.92635 1.03561 1.01332 1.20017 0.97274 0.84338 1.04652 1.24763 0.96956 0.99098 0.85197 1.70471 1.32140 1.01907 1.30492 1.20612 0.92697 0.90147 0.81683 1.40912 1.75558 1.12442 1.07670 1.50131 1.52329 1.12291 1.04350 1.19276 0.95815 0.80925 0.89773 1.22308 0.93317 1.13145 1.37768 0.94331 1.27266 1.10783 0.91245 0.91943 1.70918 1.09118 1.31460 1.43715 0.82834 0.68877 0.76953 0.76983 1.20165 1.19591 1.20136 1.77827 1.26436 0.91954 1.23896 0.88514 0.93004 0.94019 0.89137 0.87879 0.75046 0.73577 0.93603 0.96238 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.89 71.98 0.71 -2.48 15 2 C -0.02 -0.66 6.56 29.85 0.20 -0.47 15 3 C 0.22 9.14 7.39 138.63 1.02 10.17 15 4 N -0.61 -25.34 11.23 -189.84 -2.13 -27.47 15 5 C 0.51 21.93 9.10 260.78 2.37 24.31 15 6 N -0.81 -26.13 9.06 -58.86 -0.53 -26.66 15 7 N -0.40 -19.36 3.63 -353.60 -1.29 -20.64 15 8 C 0.26 13.64 5.37 85.63 0.46 14.10 15 9 C -0.63 -35.10 9.39 25.60 0.24 -34.86 15 10 H 0.04 2.27 7.81 -2.91 -0.02 2.25 15 11 C -0.01 -0.63 5.46 84.66 0.46 -0.17 15 12 N -0.92 -52.48 13.65 21.45 0.29 -52.19 15 13 Si 1.12 48.59 29.90 68.60 2.05 50.64 15 14 H -0.28 -11.54 7.11 99.48 0.71 -10.83 15 15 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 16 H -0.28 -11.36 7.11 99.48 0.71 -10.65 15 17 N -0.37 -17.86 12.68 -51.32 -0.65 -18.52 15 18 H 0.10 1.62 8.14 -2.39 -0.02 1.60 15 19 H 0.05 1.29 8.14 -2.39 -0.02 1.27 15 20 H 0.04 1.11 8.14 -2.39 -0.02 1.09 15 21 H 0.09 2.42 8.14 -2.38 -0.02 2.40 15 22 H 0.10 2.55 8.14 -2.39 -0.02 2.53 15 23 H 0.42 13.06 8.13 -92.71 -0.75 12.31 15 24 H 0.43 10.80 8.95 -92.71 -0.83 9.97 15 25 H 0.05 2.26 7.40 -2.39 -0.02 2.24 15 26 H 0.02 1.09 8.01 -2.39 -0.02 1.08 15 27 H 0.26 14.90 7.22 -92.71 -0.67 14.23 15 Total: -1.00 -68.24 242.89 2.92 -65.32 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -0.29 Total: 18.93 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 5.47 Total: 10.59 kcal Atomic # 7 Polarization: -141.17 SS G_CDS: -4.31 Total: -145.48 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.05 Total: 50.64 kcal Total: -68.24 2.92 -65.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054404626.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.519 kcal (2) G-P(sol) polarization free energy of solvation -68.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds