Wall clock time and date at job start Mon Mar 30 2020 02:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.77855 * 2 1 4 4 C 1.53226 * 109.62379 * 120.47974 * 2 1 3 5 5 C 1.52957 * 109.40669 * 65.08618 * 4 2 1 6 6 C 1.52964 * 109.81702 * 63.59539 * 5 4 2 7 7 C 1.53226 * 109.40342 * 296.40466 * 6 5 4 8 8 H 1.08999 * 109.62287 * 294.72022 * 7 6 5 9 9 C 1.52999 * 109.62630 * 174.34225 * 7 6 5 10 10 C 1.50702 * 109.47525 * 175.37515 * 9 7 6 11 11 H 1.08002 * 119.99441 * 0.02562 * 10 9 7 12 12 C 1.37871 * 120.00075 * 180.02562 * 10 9 7 13 13 N 1.31514 * 120.00481 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99886 * 179.73007 * 12 10 9 15 15 H 1.48502 * 109.46964 * 270.27509 * 14 12 10 16 16 H 1.48505 * 109.47036 * 30.26897 * 14 12 10 17 17 H 1.48490 * 109.47395 * 150.27411 * 14 12 10 18 18 C 1.51265 * 108.69965 * 54.52966 * 7 6 5 19 19 O 1.20758 * 120.84783 * 128.72734 * 18 7 6 20 20 H 1.08995 * 109.46777 * 299.52100 * 1 2 3 21 21 H 1.08997 * 109.47209 * 59.51993 * 1 2 3 22 22 H 1.09000 * 109.47415 * 179.52540 * 1 2 3 23 23 H 1.08995 * 109.48428 * 305.10186 * 4 2 1 24 24 H 1.09006 * 109.48985 * 185.07151 * 4 2 1 25 25 H 1.08989 * 109.41348 * 303.48934 * 5 4 2 26 26 H 1.09001 * 109.41224 * 183.69922 * 5 4 2 27 27 H 1.09002 * 109.47955 * 176.41991 * 6 5 4 28 28 H 1.09004 * 109.49170 * 56.38625 * 6 5 4 29 29 H 1.09009 * 109.47378 * 55.37795 * 9 7 6 30 30 H 1.08998 * 109.47458 * 295.38256 * 9 7 6 31 31 H 0.97005 * 119.99656 * 359.72741 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0446 -0.7321 1.2438 5 6 1.6429 -2.2060 1.1686 6 6 2.3207 -2.8676 -0.0325 7 6 1.8164 -2.2159 -1.3243 8 1 0.7537 -2.4239 -1.4486 9 6 2.5925 -2.7746 -2.5187 10 6 2.0186 -2.2174 -3.7959 11 1 1.1840 -1.5328 -3.7593 12 6 2.5589 -2.5815 -5.0109 13 7 3.5755 -3.4146 -5.0555 14 14 1.8426 -1.8966 -6.5945 15 1 0.7640 -2.7951 -7.0790 16 1 1.2836 -0.5444 -6.3407 17 1 2.9104 -1.8060 -7.6223 18 6 2.0342 -0.7219 -1.2308 19 8 2.5998 -0.1222 -2.1133 20 1 -0.3633 0.5064 0.8942 21 1 -0.3633 0.5213 -0.8856 22 1 -0.3634 -1.0276 -0.0085 23 1 1.6102 -0.2819 2.1364 24 1 3.1309 -0.6532 1.2889 25 1 0.5610 -2.2816 1.0610 26 1 1.9513 -2.7127 2.0831 27 1 2.0818 -3.9311 -0.0445 28 1 3.4004 -2.7383 0.0424 29 1 2.5119 -3.8616 -2.5281 30 1 3.6411 -2.4888 -2.4365 31 1 3.9477 -3.7699 -4.2332 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059287634.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:04 Heat of formation + Delta-G solvation = -72.219511 kcal Electronic energy + Delta-G solvation = -12868.243232 eV Core-core repulsion = 10727.354979 eV Total energy + Delta-G solvation = -2140.888252 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.64012 -36.12440 -33.96149 -32.00543 -29.86869 -26.46521 -25.35709 -22.82776 -21.70093 -20.50965 -17.80114 -16.60767 -15.57003 -15.12999 -14.59016 -13.93192 -13.62773 -13.32045 -12.84223 -12.71901 -12.25708 -11.93073 -11.76208 -11.40339 -11.14244 -10.87704 -10.72083 -10.46423 -10.33509 -10.20263 -10.02259 -9.64598 -8.47333 -8.40152 -8.14399 -6.21591 -3.86398 2.81583 3.50441 3.57218 3.72262 4.61485 4.66603 4.89159 5.04300 5.11862 5.34592 5.46162 5.54782 5.58500 5.78968 5.82922 5.88029 6.01801 6.05864 6.08081 6.18791 6.25637 6.35449 6.55153 6.65327 6.88133 7.37342 7.54989 8.31735 8.41233 8.60098 9.02678 9.81549 11.19639 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.050845 B = 0.010752 C = 0.009678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.560446 B = 2603.457656 C = 2892.501871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.144 4.144 3 H 0.084 0.916 4 C -0.107 4.107 5 C -0.124 4.124 6 C -0.111 4.111 7 C -0.122 4.122 8 H 0.089 0.911 9 C 0.020 3.980 10 C -0.576 4.576 11 H 0.044 0.956 12 C 0.012 3.988 13 N -0.920 5.920 14 Si 1.069 2.931 15 H -0.290 1.290 16 H -0.290 1.290 17 H -0.285 1.285 18 C 0.361 3.639 19 O -0.423 6.423 20 H 0.059 0.941 21 H 0.057 0.943 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.012 0.988 30 H 0.010 0.990 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.551 3.625 12.926 14.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 H 0.102 0.898 4 C -0.144 4.144 5 C -0.162 4.162 6 C -0.149 4.149 7 C -0.141 4.141 8 H 0.107 0.893 9 C -0.017 4.017 10 C -0.614 4.614 11 H 0.063 0.937 12 C -0.190 4.190 13 N -0.558 5.558 14 Si 0.898 3.102 15 H -0.217 1.217 16 H -0.216 1.216 17 H -0.211 1.211 18 C 0.233 3.767 19 O -0.292 6.292 20 H 0.078 0.922 21 H 0.076 0.924 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.030 0.970 30 H 0.028 0.972 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.084 3.939 10.786 12.558 hybrid contribution -0.212 0.057 1.764 1.778 sum -5.296 3.995 12.551 14.196 Atomic orbital electron populations 1.21729 0.93344 1.02684 1.01904 1.22024 0.97723 1.00433 0.96202 0.89783 1.21538 1.00927 0.95642 0.96338 1.21623 1.01095 0.95124 0.98342 1.21626 1.00212 0.99744 0.93288 1.21837 1.02251 0.93272 0.96749 0.89303 1.19161 0.95097 0.95326 0.92067 1.21890 1.18312 1.29308 0.91926 0.93744 1.25735 0.95535 0.95679 1.02094 1.70756 1.23332 1.30205 1.31467 0.83542 0.75632 0.75631 0.75344 1.21662 1.21607 1.21084 1.24710 0.75431 0.91582 0.84999 1.90416 1.30477 1.69854 1.38459 0.92188 0.92401 0.91637 0.91539 0.91858 0.91447 0.92008 0.91444 0.92132 0.97012 0.97186 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.88 37.16 0.33 -1.47 16 2 C -0.14 -2.18 3.18 -91.34 -0.29 -2.47 16 3 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 4 C -0.11 -1.34 5.42 -26.64 -0.14 -1.48 16 5 C -0.12 -1.56 5.65 -26.77 -0.15 -1.71 16 6 C -0.11 -1.79 5.24 -26.63 -0.14 -1.93 16 7 C -0.12 -2.52 2.13 -91.38 -0.19 -2.71 16 8 H 0.09 1.78 7.80 -51.93 -0.40 1.37 16 9 C 0.02 0.54 3.46 -27.88 -0.10 0.44 16 10 C -0.58 -17.19 7.65 -34.44 -0.26 -17.46 16 11 H 0.04 1.33 7.52 -52.49 -0.39 0.94 16 12 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 13 N -0.92 -29.50 13.65 55.43 0.76 -28.75 16 14 Si 1.07 27.09 29.90 -169.99 -5.08 22.01 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 C 0.36 7.45 5.68 -28.45 -0.16 7.29 16 19 O -0.42 -10.81 15.72 6.00 0.09 -10.72 16 20 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.06 0.82 5.98 -51.93 -0.31 0.51 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 0.79 6.42 -51.94 -0.33 0.46 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.01 0.32 8.01 -51.92 -0.42 -0.10 16 30 H 0.01 0.28 7.96 -51.93 -0.41 -0.13 16 31 H 0.27 8.48 7.22 -40.82 -0.29 8.18 16 LS Contribution 249.39 15.07 3.76 3.76 Total: -1.00 -33.84 249.39 -6.43 -40.27 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: -4.75 Total: -5.35 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -1.21 Total: -21.23 kcal Atomic # 7 Polarization: -29.50 SS G_CDS: 0.76 Total: -28.75 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 27.09 SS G_CDS: -5.08 Total: 22.01 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -33.84 -6.43 -40.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059287634.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.950 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds