Wall clock time and date at job start Mon Mar 30 2020 02:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.77855 * 2 1 4 4 C 1.53226 * 109.62379 * 120.47974 * 2 1 3 5 5 C 1.52957 * 109.40669 * 65.08618 * 4 2 1 6 6 C 1.52964 * 109.81702 * 63.59539 * 5 4 2 7 7 C 1.53226 * 109.40342 * 296.40466 * 6 5 4 8 8 H 1.08999 * 109.62287 * 294.72022 * 7 6 5 9 9 C 1.52999 * 109.62630 * 174.34225 * 7 6 5 10 10 C 1.50702 * 109.47525 * 175.37515 * 9 7 6 11 11 H 1.08002 * 119.99441 * 0.02562 * 10 9 7 12 12 C 1.37871 * 120.00075 * 180.02562 * 10 9 7 13 13 N 1.31514 * 120.00481 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99886 * 179.73007 * 12 10 9 15 15 H 1.48502 * 109.46964 * 270.27509 * 14 12 10 16 16 H 1.48505 * 109.47036 * 30.26897 * 14 12 10 17 17 H 1.48490 * 109.47395 * 150.27411 * 14 12 10 18 18 C 1.51265 * 108.69965 * 54.52966 * 7 6 5 19 19 O 1.20758 * 120.84783 * 128.72734 * 18 7 6 20 20 H 1.08995 * 109.46777 * 299.52100 * 1 2 3 21 21 H 1.08997 * 109.47209 * 59.51993 * 1 2 3 22 22 H 1.09000 * 109.47415 * 179.52540 * 1 2 3 23 23 H 1.08995 * 109.48428 * 305.10186 * 4 2 1 24 24 H 1.09006 * 109.48985 * 185.07151 * 4 2 1 25 25 H 1.08989 * 109.41348 * 303.48934 * 5 4 2 26 26 H 1.09001 * 109.41224 * 183.69922 * 5 4 2 27 27 H 1.09002 * 109.47955 * 176.41991 * 6 5 4 28 28 H 1.09004 * 109.49170 * 56.38625 * 6 5 4 29 29 H 1.09009 * 109.47378 * 55.37795 * 9 7 6 30 30 H 1.08998 * 109.47458 * 295.38256 * 9 7 6 31 31 H 0.97005 * 119.99656 * 359.72741 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0446 -0.7321 1.2438 5 6 1.6429 -2.2060 1.1686 6 6 2.3207 -2.8676 -0.0325 7 6 1.8164 -2.2159 -1.3243 8 1 0.7537 -2.4239 -1.4486 9 6 2.5925 -2.7746 -2.5187 10 6 2.0186 -2.2174 -3.7959 11 1 1.1840 -1.5328 -3.7593 12 6 2.5589 -2.5815 -5.0109 13 7 3.5755 -3.4146 -5.0555 14 14 1.8426 -1.8966 -6.5945 15 1 0.7640 -2.7951 -7.0790 16 1 1.2836 -0.5444 -6.3407 17 1 2.9104 -1.8060 -7.6223 18 6 2.0342 -0.7219 -1.2308 19 8 2.5998 -0.1222 -2.1133 20 1 -0.3633 0.5064 0.8942 21 1 -0.3633 0.5213 -0.8856 22 1 -0.3634 -1.0276 -0.0085 23 1 1.6102 -0.2819 2.1364 24 1 3.1309 -0.6532 1.2889 25 1 0.5610 -2.2816 1.0610 26 1 1.9513 -2.7127 2.0831 27 1 2.0818 -3.9311 -0.0445 28 1 3.4004 -2.7383 0.0424 29 1 2.5119 -3.8616 -2.5281 30 1 3.6411 -2.4888 -2.4365 31 1 3.9477 -3.7699 -4.2332 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059287634.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:03 Heat of formation + Delta-G solvation = -93.979655 kcal Electronic energy + Delta-G solvation = -12869.186822 eV Core-core repulsion = 10727.354979 eV Total energy + Delta-G solvation = -2141.831843 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.19070 -37.60089 -35.97496 -33.73966 -31.33371 -28.13281 -26.76383 -24.89609 -23.07007 -22.00100 -19.25338 -18.89298 -17.02661 -16.66258 -15.88081 -15.69479 -15.42674 -14.92001 -14.50340 -14.09255 -13.66980 -13.54868 -13.26667 -12.97177 -12.74366 -12.46280 -12.30820 -12.08660 -12.01870 -11.70993 -11.43016 -11.26603 -10.61290 -10.56776 -9.98886 -8.67672 -6.32606 1.19436 1.44252 1.56098 1.73132 2.53910 3.13383 3.22407 3.75491 3.88669 3.97331 4.07953 4.23656 4.44664 4.50271 4.55001 4.70058 4.84275 4.90207 5.00795 5.03413 5.10814 5.14339 5.21964 5.27201 5.33752 5.45056 5.54680 5.98116 6.18475 6.57639 6.81380 7.43935 8.73736 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.050845 B = 0.010752 C = 0.009678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.560446 B = 2603.457656 C = 2892.501871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.135 4.135 3 H 0.086 0.914 4 C -0.104 4.104 5 C -0.117 4.117 6 C -0.107 4.107 7 C -0.125 4.125 8 H 0.098 0.902 9 C 0.021 3.979 10 C -0.585 4.585 11 H 0.037 0.963 12 C -0.047 4.047 13 N -0.943 5.943 14 Si 1.116 2.884 15 H -0.263 1.263 16 H -0.280 1.280 17 H -0.282 1.282 18 C 0.356 3.644 19 O -0.489 6.489 20 H 0.098 0.902 21 H 0.041 0.959 22 H 0.070 0.930 23 H 0.108 0.892 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.048 0.952 29 H -0.001 1.001 30 H -0.025 1.025 31 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.429 4.183 14.964 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 H 0.105 0.895 4 C -0.141 4.141 5 C -0.154 4.154 6 C -0.145 4.145 7 C -0.144 4.144 8 H 0.116 0.884 9 C -0.016 4.016 10 C -0.623 4.623 11 H 0.056 0.944 12 C -0.242 4.242 13 N -0.582 5.582 14 Si 0.937 3.063 15 H -0.188 1.188 16 H -0.206 1.206 17 H -0.207 1.207 18 C 0.233 3.767 19 O -0.363 6.363 20 H 0.117 0.883 21 H 0.061 0.939 22 H 0.089 0.911 23 H 0.126 0.874 24 H 0.075 0.925 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.017 0.983 30 H -0.007 1.007 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.981 4.476 12.871 15.311 hybrid contribution 0.394 -0.140 1.165 1.238 sum -6.586 4.336 14.036 16.100 Atomic orbital electron populations 1.21779 0.91113 1.03436 1.03119 1.22006 0.99334 1.00032 0.94076 0.89540 1.21614 1.00842 0.95500 0.96152 1.21623 1.01623 0.94869 0.97281 1.21620 0.99819 1.00323 0.92693 1.21826 1.01742 0.94217 0.96582 0.88422 1.19060 0.93867 0.94549 0.94083 1.22246 1.17910 1.28634 0.93501 0.94441 1.27332 0.95312 0.95410 1.06191 1.70889 1.24732 1.31881 1.30698 0.82962 0.75812 0.75874 0.71625 1.18826 1.20592 1.20716 1.25532 0.73482 0.91654 0.86038 1.90391 1.33707 1.70820 1.41358 0.88344 0.93932 0.91080 0.87407 0.92505 0.89805 0.88851 0.90648 0.93359 0.98268 1.00672 0.93822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.88 71.98 0.64 -2.41 16 2 C -0.14 -3.75 3.18 -11.26 -0.04 -3.79 16 3 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 4 C -0.10 -2.16 5.42 30.66 0.17 -1.99 16 5 C -0.12 -2.43 5.65 30.57 0.17 -2.25 16 6 C -0.11 -3.31 5.24 30.66 0.16 -3.15 16 7 C -0.12 -5.17 2.13 -11.28 -0.02 -5.19 16 8 H 0.10 3.85 7.80 -2.39 -0.02 3.83 16 9 C 0.02 1.18 3.46 29.85 0.10 1.29 16 10 C -0.58 -36.06 7.65 25.60 0.20 -35.86 16 11 H 0.04 2.30 7.52 -2.91 -0.02 2.28 16 12 C -0.05 -2.92 5.46 84.65 0.46 -2.46 16 13 N -0.94 -62.46 13.65 21.45 0.29 -62.16 16 14 Si 1.12 55.00 29.90 68.60 2.05 57.05 16 15 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 17 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 18 C 0.36 14.80 5.68 29.48 0.17 14.97 16 19 O -0.49 -26.00 15.72 -1.44 -0.02 -26.03 16 20 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.07 1.51 5.98 -2.39 -0.01 1.49 16 23 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.08 1.53 6.42 -2.39 -0.02 1.51 16 26 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 28 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.00 -0.05 8.01 -2.38 -0.02 -0.07 16 30 H -0.02 -1.54 7.96 -2.39 -0.02 -1.56 16 31 H 0.25 16.89 7.22 -92.70 -0.67 16.22 16 Total: -1.00 -77.58 249.39 5.52 -72.07 By element: Atomic # 1 Polarization: -1.26 SS G_CDS: 1.19 Total: -0.08 kcal Atomic # 6 Polarization: -42.86 SS G_CDS: 2.01 Total: -40.86 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: 0.29 Total: -62.16 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.02 Total: -26.03 kcal Atomic # 14 Polarization: 55.00 SS G_CDS: 2.05 Total: 57.05 kcal Total: -77.58 5.52 -72.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059287634.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.912 kcal (2) G-P(sol) polarization free energy of solvation -77.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds