Wall clock time and date at job start Mon Mar 30 2020 01:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46982 * 2 1 4 4 C 1.34950 * 126.63458 * 270.20482 * 3 2 1 5 5 C 1.50702 * 125.48686 * 359.97438 * 4 3 2 6 6 N 1.46895 * 109.47093 * 270.30782 * 5 4 3 7 7 N 1.33458 * 109.02486 * 180.27504 * 4 3 2 8 8 N 1.28757 * 109.98477 * 359.73217 * 7 4 3 9 9 N 1.36664 * 126.63944 * 90.02720 * 3 2 1 10 10 C 1.37570 * 126.88440 * 359.97438 * 9 3 2 11 11 H 1.08000 * 119.99710 * 5.49459 * 10 9 3 12 12 C 1.39008 * 120.00265 * 185.48732 * 10 9 3 13 13 N 1.31255 * 119.99861 * 353.78670 * 12 10 9 14 14 Si 1.86802 * 120.00123 * 174.05977 * 12 10 9 15 15 H 1.48495 * 109.47259 * 94.98586 * 14 12 10 16 16 H 1.48500 * 109.47016 * 214.98634 * 14 12 10 17 17 H 1.48498 * 109.47148 * 334.98202 * 14 12 10 18 18 H 1.09001 * 109.46871 * 179.97438 * 1 2 3 19 19 H 1.08994 * 109.47078 * 299.99966 * 1 2 3 20 20 H 1.08996 * 109.46915 * 60.00695 * 1 2 3 21 21 H 1.08998 * 109.47531 * 239.99853 * 2 1 3 22 22 H 1.08998 * 109.47309 * 119.99961 * 2 1 3 23 23 H 1.08994 * 109.47125 * 30.31381 * 5 4 3 24 24 H 1.09003 * 109.46796 * 150.31369 * 5 4 3 25 25 H 1.00897 * 110.99872 * 179.97438 * 6 5 4 26 26 H 1.00903 * 111.00607 * 303.95920 * 6 5 4 27 27 H 0.97002 * 120.00247 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2970 2.1813 -1.0829 5 6 2.1385 1.7467 -2.5171 6 7 3.3905 1.1376 -2.9854 7 7 2.7281 3.3781 -0.6792 8 7 2.7485 3.4275 0.6073 9 7 2.3046 2.1896 1.0966 10 6 2.1747 1.8217 2.4158 11 1 1.9102 0.8058 2.6695 12 6 2.3840 2.7574 3.4222 13 7 2.8235 3.9572 3.1218 14 14 2.0470 2.3050 5.2030 15 1 3.3075 1.8552 5.8465 16 1 1.5192 3.4913 5.9238 17 1 1.0464 1.2090 5.2545 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 1.8934 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 1.3310 1.0182 -2.5889 24 1 1.9024 2.6129 -3.1353 25 1 3.3096 0.8372 -3.9453 26 1 4.1669 1.7715 -2.8688 27 1 2.9692 4.6103 3.8240 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062295939.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:40 Heat of formation + Delta-G solvation = 74.173275 kcal Electronic energy + Delta-G solvation = -12450.331301 eV Core-core repulsion = 10244.543525 eV Total energy + Delta-G solvation = -2205.787777 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.16331 -34.55711 -33.88091 -32.97087 -30.73131 -28.07857 -25.80321 -23.82219 -22.72523 -20.78599 -18.71828 -17.29020 -15.52279 -15.40535 -14.50704 -14.34496 -13.54278 -13.43072 -13.24972 -12.43043 -11.89306 -11.71460 -11.67067 -11.39532 -11.33701 -10.82477 -10.59144 -10.36179 -9.89935 -9.47203 -9.13569 -8.59440 -8.17324 -7.20090 -6.77904 -4.55605 2.84655 2.97915 3.04018 3.35270 3.72157 4.07776 4.64702 4.84176 5.35605 5.74283 5.77151 5.90151 5.92129 6.06648 6.27450 6.42982 6.48970 6.52636 6.78261 6.95281 7.01064 7.33320 7.59240 7.87751 7.92950 7.99905 8.57687 9.20256 10.19453 10.26825 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.047066 B = 0.012055 C = 0.010171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.771049 B = 2322.161876 C = 2752.138587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.029 4.029 3 C -0.065 4.065 4 C -0.072 4.072 5 C 0.163 3.837 6 N -0.846 5.846 7 N -0.331 5.331 8 N -0.095 5.095 9 N -0.146 5.146 10 C -0.313 4.313 11 H 0.119 0.881 12 C 0.048 3.952 13 N -0.762 5.762 14 Si 0.939 3.061 15 H -0.268 1.268 16 H -0.273 1.273 17 H -0.260 1.260 18 H 0.048 0.952 19 H 0.053 0.947 20 H 0.050 0.950 21 H 0.075 0.925 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.025 0.975 25 H 0.329 0.671 26 H 0.341 0.659 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.030 -6.580 -2.769 7.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.069 4.069 3 C -0.200 4.200 4 C -0.220 4.220 5 C 0.031 3.969 6 N -0.376 5.376 7 N -0.191 5.191 8 N -0.071 5.071 9 N 0.082 4.918 10 C -0.449 4.449 11 H 0.137 0.863 12 C -0.172 4.172 13 N -0.389 5.389 14 Si 0.762 3.238 15 H -0.193 1.193 16 H -0.198 1.198 17 H -0.184 1.184 18 H 0.067 0.933 19 H 0.073 0.927 20 H 0.069 0.931 21 H 0.093 0.907 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.043 0.957 25 H 0.140 0.860 26 H 0.154 0.846 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.548 -5.357 -1.777 6.192 hybrid contribution -0.437 -0.336 0.091 0.559 sum -2.985 -5.692 -1.686 6.645 Atomic orbital electron populations 1.21721 0.96083 1.00263 1.01960 1.19664 0.94673 0.90598 1.01954 1.20830 1.15371 0.96503 0.87332 1.20324 1.14687 0.92557 0.94406 1.19663 0.91375 0.95711 0.90130 1.58766 1.06308 1.47133 1.25356 1.73980 1.18490 1.19366 1.07217 1.82521 1.24919 0.99870 0.99775 1.46586 1.30922 1.09055 1.05211 1.20079 1.48478 0.98396 0.77979 0.86307 1.25762 0.94895 0.94765 1.01746 1.70159 1.30100 1.03626 1.34971 0.85732 0.79430 0.79086 0.79565 1.19339 1.19782 1.18412 0.93333 0.92748 0.93087 0.90678 0.92064 0.91147 0.95654 0.85960 0.84611 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.89 37.16 0.37 -2.02 15 2 C -0.03 -0.56 5.77 -27.88 -0.16 -0.72 15 3 C -0.06 -1.58 6.23 -81.61 -0.51 -2.09 15 4 C -0.07 -1.76 6.61 -83.05 -0.55 -2.31 15 5 C 0.16 3.07 6.93 -4.98 -0.03 3.03 15 6 N -0.85 -14.04 9.61 -11.41 -0.11 -14.15 15 7 N -0.33 -9.26 12.33 33.16 0.41 -8.85 15 8 N -0.10 -2.88 11.76 60.35 0.71 -2.17 15 9 N -0.15 -4.09 3.78 -7.77 -0.03 -4.12 15 10 C -0.31 -8.25 10.04 -14.69 -0.15 -8.40 15 11 H 0.12 2.82 7.18 -52.49 -0.38 2.44 15 12 C 0.05 1.21 5.50 -17.51 -0.10 1.11 15 13 N -0.76 -21.04 11.91 55.50 0.66 -20.38 15 14 Si 0.94 18.50 29.56 -169.99 -5.02 13.48 15 15 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 16 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 17 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 18 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 19 H 0.05 0.99 8.14 -51.93 -0.42 0.56 15 20 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 21 H 0.07 1.33 7.79 -51.93 -0.40 0.93 15 22 H 0.06 1.16 7.47 -51.93 -0.39 0.77 15 23 H 0.07 1.19 7.76 -51.93 -0.40 0.79 15 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 15 25 H 0.33 4.24 9.08 -39.29 -0.36 3.88 15 26 H 0.34 5.91 8.99 -39.29 -0.35 5.56 15 27 H 0.28 7.01 8.31 -40.82 -0.34 6.67 15 LS Contribution 240.37 15.07 3.62 3.62 Total: -1.00 -31.84 240.37 -4.00 -35.84 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -3.11 Total: 8.11 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -1.13 Total: -11.38 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 1.64 Total: -49.66 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -31.84 -4.00 -35.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062295939.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.009 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds