Wall clock time and date at job start Mon Mar 30 2020 01:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34947 * 126.63739 * 2 1 4 4 C 1.50696 * 125.48534 * 359.97009 * 3 2 1 5 5 C 1.53002 * 109.46999 * 89.99962 * 4 3 2 6 6 N 1.46906 * 109.47053 * 179.97438 * 5 4 3 7 7 N 1.33460 * 109.02595 * 180.23073 * 3 2 1 8 8 N 1.28765 * 109.98357 * 359.55015 * 7 3 2 9 9 N 1.36674 * 126.63428 * 179.97438 * 2 1 3 10 10 C 1.37565 * 126.88750 * 0.03045 * 9 2 1 11 11 H 1.08012 * 119.99988 * 0.02562 * 10 9 2 12 12 C 1.39007 * 120.00272 * 180.02562 * 10 9 2 13 13 N 1.31248 * 119.99965 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00314 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47080 * 89.99767 * 14 12 10 16 16 H 1.48498 * 109.47128 * 210.00211 * 14 12 10 17 17 H 1.48507 * 109.47070 * 330.00047 * 14 12 10 18 18 H 1.08996 * 109.47000 * 89.99761 * 1 2 3 19 19 H 1.08997 * 109.47116 * 209.99533 * 1 2 3 20 20 H 1.08996 * 109.46588 * 329.99364 * 1 2 3 21 21 H 1.09001 * 109.47328 * 329.99887 * 4 3 2 22 22 H 1.09004 * 109.47043 * 209.99697 * 4 3 2 23 23 H 1.08992 * 109.47056 * 59.99641 * 5 4 3 24 24 H 1.09004 * 109.47006 * 299.99757 * 5 4 3 25 25 H 1.00897 * 110.99706 * 179.97438 * 6 5 4 26 26 H 1.00899 * 110.99484 * 303.95475 * 6 5 4 27 27 H 0.96995 * 120.00623 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3124 1.0829 0.0000 4 6 1.8497 2.5171 -0.0006 5 6 1.6926 3.0028 1.4417 6 7 1.2422 4.4012 1.4411 7 7 3.5844 0.6791 -0.0051 8 7 3.6377 -0.6075 0.0012 9 7 2.3226 -1.0968 0.0005 10 6 1.9324 -2.4159 0.0005 11 1 0.8822 -2.6684 -0.0003 12 6 2.8896 -3.4239 0.0016 13 7 4.1657 -3.1171 0.0021 14 14 2.3597 -5.2152 0.0023 15 1 2.2200 -5.6906 -1.3975 16 1 3.3816 -6.0333 0.7034 17 1 1.0562 -5.3455 0.7017 18 1 -0.3633 0.0000 -1.0276 19 1 -0.3633 -0.8900 0.5137 20 1 -0.3632 0.8899 0.5139 21 1 0.8914 2.5895 -0.5149 22 1 2.5855 3.1359 -0.5143 23 1 2.6508 2.9304 1.9559 24 1 0.9568 2.3840 1.9554 25 1 1.1304 4.7454 2.3829 26 1 1.8754 4.9847 0.9151 27 1 4.8337 -3.8204 0.0025 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062296123.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:00 Heat of formation + Delta-G solvation = 47.753609 kcal Electronic energy + Delta-G solvation = -12228.643905 eV Core-core repulsion = 10021.710485 eV Total energy + Delta-G solvation = -2206.933420 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.11527 -36.69877 -35.83592 -33.83913 -32.73757 -29.75265 -27.40924 -26.94663 -23.37713 -22.78287 -20.65355 -19.28075 -17.38552 -16.71525 -16.31218 -15.95372 -15.80130 -14.81910 -14.27935 -14.10709 -13.84649 -13.54775 -13.13501 -13.03716 -12.82922 -12.69115 -12.16356 -12.07829 -11.68254 -11.49651 -11.06220 -10.57258 -9.62259 -9.10845 -8.69148 -6.61095 1.09242 1.36439 1.56287 1.63216 2.05927 2.16235 2.76831 2.92133 3.70419 4.11632 4.38730 4.41118 4.43334 4.54153 4.68747 4.84704 4.89227 4.97056 5.15459 5.24226 5.30001 5.49659 5.98600 6.04320 6.21348 6.61908 6.66749 7.22456 8.23242 8.32402 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.069948 B = 0.009317 C = 0.008561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.201211 B = 3004.679302 C = 3269.772393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C -0.100 4.100 3 C -0.071 4.071 4 C -0.008 4.008 5 C 0.080 3.920 6 N -0.845 5.845 7 N -0.365 5.365 8 N -0.159 5.159 9 N -0.164 5.164 10 C -0.341 4.341 11 H 0.146 0.854 12 C -0.003 4.003 13 N -0.812 5.812 14 Si 1.027 2.973 15 H -0.260 1.260 16 H -0.272 1.272 17 H -0.240 1.240 18 H 0.073 0.927 19 H 0.064 0.936 20 H 0.092 0.908 21 H 0.090 0.910 22 H 0.061 0.939 23 H 0.006 0.994 24 H 0.068 0.932 25 H 0.351 0.649 26 H 0.346 0.654 27 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.818 3.408 1.687 9.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.235 4.235 3 C -0.220 4.220 4 C -0.048 4.048 5 C -0.051 4.051 6 N -0.376 5.376 7 N -0.223 5.223 8 N -0.134 5.134 9 N 0.063 4.937 10 C -0.477 4.477 11 H 0.163 0.837 12 C -0.217 4.217 13 N -0.440 5.440 14 Si 0.844 3.156 15 H -0.184 1.184 16 H -0.197 1.197 17 H -0.163 1.163 18 H 0.092 0.908 19 H 0.083 0.917 20 H 0.110 0.890 21 H 0.108 0.892 22 H 0.080 0.920 23 H 0.024 0.976 24 H 0.086 0.914 25 H 0.164 0.836 26 H 0.159 0.841 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.601 2.752 1.320 8.191 hybrid contribution 0.403 -0.448 0.458 0.757 sum -7.197 2.304 1.778 7.763 Atomic orbital electron populations 1.20068 0.84812 1.03351 1.02685 1.21990 0.96727 0.86675 1.18129 1.21317 0.88614 0.97144 1.14904 1.19602 1.00935 0.87271 0.97006 1.21522 0.97357 0.90319 0.95945 1.58714 1.55714 1.02367 1.20774 1.73944 1.21475 1.06809 1.20070 1.82468 0.97378 1.00835 1.32739 1.46980 1.05726 1.06559 1.34399 1.20924 0.96561 0.77893 1.52278 0.83721 1.27116 0.94221 1.07149 0.93230 1.70313 1.02135 1.37110 1.34435 0.84486 0.79504 0.71942 0.79674 1.18422 1.19683 1.16282 0.90808 0.91672 0.88952 0.89151 0.92017 0.97568 0.91384 0.83606 0.84075 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.75 9.70 71.24 0.69 -1.05 15 2 C -0.10 -4.83 6.98 41.05 0.29 -4.54 15 3 C -0.07 -3.42 6.35 41.55 0.26 -3.16 15 4 C -0.01 -0.30 5.62 29.85 0.17 -0.13 15 5 C 0.08 2.52 6.77 86.30 0.58 3.11 15 6 N -0.84 -19.99 9.62 -186.71 -1.80 -21.78 15 7 N -0.37 -21.18 12.33 -48.99 -0.60 -21.78 15 8 N -0.16 -10.03 11.73 37.02 0.43 -9.59 15 9 N -0.16 -9.29 3.78 -178.48 -0.67 -9.97 15 10 C -0.34 -17.83 10.05 83.98 0.84 -16.99 15 11 H 0.15 6.52 7.22 -2.90 -0.02 6.50 15 12 C 0.00 -0.14 5.50 84.96 0.47 0.33 15 13 N -0.81 -46.02 11.89 21.66 0.26 -45.76 15 14 Si 1.03 36.81 29.55 68.60 2.03 38.84 15 15 H -0.26 -8.93 7.11 99.48 0.71 -8.22 15 16 H -0.27 -9.60 7.11 99.48 0.71 -8.89 15 17 H -0.24 -7.73 7.11 99.48 0.71 -7.02 15 18 H 0.07 2.30 8.14 -2.39 -0.02 2.28 15 19 H 0.06 2.15 7.51 -2.39 -0.02 2.13 15 20 H 0.09 2.68 7.77 -2.39 -0.02 2.66 15 21 H 0.09 2.88 7.75 -2.39 -0.02 2.86 15 22 H 0.06 2.19 8.14 -2.38 -0.02 2.17 15 23 H 0.01 0.21 8.14 -2.39 -0.02 0.19 15 24 H 0.07 2.16 8.14 -2.38 -0.02 2.14 15 25 H 0.35 6.76 9.08 -89.70 -0.81 5.95 15 26 H 0.35 7.32 8.99 -89.69 -0.81 6.52 15 27 H 0.29 14.68 8.31 -92.71 -0.77 13.91 15 Total: -1.00 -71.84 240.38 2.52 -69.31 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -0.42 Total: 23.17 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 3.30 Total: -22.44 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -2.38 Total: -108.89 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Total: -71.84 2.52 -69.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062296123.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.067 kcal (2) G-P(sol) polarization free energy of solvation -71.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds