Wall clock time and date at job start Mon Mar 30 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.35973 * 2 1 4 4 C 1.52965 * 109.41189 * 119.82717 * 2 1 3 5 5 C 1.53229 * 109.41314 * 183.70887 * 4 2 1 6 6 C 1.51260 * 108.53957 * 305.36317 * 5 4 2 7 7 O 1.20765 * 120.85331 * 231.33096 * 6 5 4 8 8 C 1.51268 * 118.29991 * 51.34962 * 6 5 4 9 9 H 1.09004 * 109.62527 * 188.74895 * 8 6 5 10 10 C 1.52998 * 109.62516 * 68.36718 * 8 6 5 11 11 C 1.50703 * 109.47249 * 65.00033 * 10 8 6 12 12 H 1.07999 * 119.99760 * 0.02562 * 11 10 8 13 13 C 1.37871 * 120.00231 * 179.97438 * 11 10 8 14 14 N 1.31514 * 119.99745 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00316 * 180.02562 * 13 11 10 16 16 H 1.48511 * 109.46875 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47384 * 119.99777 * 15 13 11 18 18 H 1.48502 * 109.47192 * 240.00405 * 15 13 11 19 19 C 1.52991 * 109.43404 * 240.16868 * 2 1 3 20 20 H 1.09002 * 109.46786 * 300.17802 * 1 2 3 21 21 H 1.09000 * 109.46780 * 60.17234 * 1 2 3 22 22 H 1.08996 * 109.47447 * 180.17451 * 1 2 3 23 23 H 1.09002 * 109.48383 * 63.72107 * 4 2 1 24 24 H 1.08999 * 109.47882 * 303.69470 * 4 2 1 25 25 H 1.09000 * 109.62841 * 65.08371 * 5 4 2 26 26 H 1.09005 * 109.62497 * 185.64969 * 5 4 2 27 27 H 1.09005 * 109.47131 * 184.99810 * 10 8 6 28 28 H 1.08999 * 109.47452 * 305.00007 * 10 8 6 29 29 H 0.97003 * 119.99879 * 179.97438 * 14 13 11 30 30 H 1.09005 * 109.47498 * 56.32327 * 19 2 1 31 31 H 1.08998 * 109.47623 * 296.29367 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8913 1.0284 0.0000 4 6 2.0384 -0.7176 1.2516 5 6 3.5678 -0.6370 1.2990 6 6 4.1187 -1.1834 0.0006 7 8 4.9761 -2.0339 0.0007 8 6 3.5684 -0.6371 -1.2983 9 1 3.9438 -1.2294 -2.1328 10 6 4.0014 0.8206 -1.4669 11 6 5.5000 0.8861 -1.6121 12 1 6.0850 -0.0214 -1.5870 13 6 6.1240 2.1042 -1.7780 14 7 5.4115 3.2092 -1.8091 15 14 7.9815 2.1853 -1.9587 16 1 8.5457 0.8132 -1.8908 17 1 8.3254 2.7971 -3.2673 18 1 8.5500 3.0096 -0.8620 19 6 2.0390 -0.7177 -1.2516 20 1 -0.3633 0.5166 0.8884 21 1 -0.3633 0.5112 -0.8915 22 1 -0.3634 -1.0276 0.0031 23 1 1.7301 -1.7627 1.2219 24 1 1.6215 -0.2406 2.1386 25 1 3.8762 0.4015 1.4193 26 1 3.9400 -1.2313 2.1335 27 1 3.5315 1.2385 -2.3574 28 1 3.6958 1.3941 -0.5918 29 1 5.8506 4.0663 -1.9254 30 1 1.6225 -0.2406 -2.1388 31 1 1.7307 -1.7627 -1.2220 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075546812.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:35 Heat of formation + Delta-G solvation = -76.346056 kcal Electronic energy + Delta-G solvation = -12801.246356 eV Core-core repulsion = 10660.179164 eV Total energy + Delta-G solvation = -2141.067193 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.45129 -36.51774 -33.43113 -31.38992 -30.66048 -27.11577 -24.67646 -23.06455 -21.70099 -20.41366 -17.72112 -16.34443 -15.39606 -14.68060 -14.42352 -14.16452 -13.97765 -13.50356 -12.74169 -12.51544 -12.08821 -11.90195 -11.76984 -11.41852 -11.13223 -11.01131 -10.69640 -10.54285 -10.31855 -10.18630 -9.97308 -9.31937 -9.07313 -8.56950 -8.31585 -6.05036 -4.07263 2.84167 3.30592 3.38325 3.45925 4.45096 4.87149 5.04189 5.13147 5.21417 5.32040 5.56658 5.70430 5.79942 5.86394 5.90554 6.03210 6.08891 6.15313 6.29023 6.39485 6.46927 6.56361 6.65180 6.81826 6.93226 7.57678 7.63465 7.94109 8.32111 8.36059 9.00441 9.58333 11.05655 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.043071 B = 0.011126 C = 0.009893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.930137 B = 2516.106042 C = 2829.663021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 H 0.087 0.913 4 C -0.102 4.102 5 C -0.171 4.171 6 C 0.388 3.612 7 O -0.480 6.480 8 C -0.132 4.132 9 H 0.080 0.920 10 C 0.036 3.964 11 C -0.527 4.527 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.894 5.894 15 Si 0.889 3.111 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.102 4.102 20 H 0.051 0.949 21 H 0.054 0.946 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.103 0.897 26 H 0.076 0.924 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.260 0.740 30 H 0.069 0.931 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.726 -4.733 4.315 10.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 H 0.105 0.895 4 C -0.140 4.140 5 C -0.209 4.209 6 C 0.265 3.735 7 O -0.355 6.355 8 C -0.152 4.152 9 H 0.099 0.901 10 C -0.001 4.001 11 C -0.565 4.565 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.533 5.533 15 Si 0.717 3.283 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.140 4.140 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.122 0.878 26 H 0.095 0.905 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.261 -5.001 4.297 10.570 hybrid contribution 1.061 0.301 -0.131 1.111 sum -7.200 -4.700 4.166 9.555 Atomic orbital electron populations 1.21807 0.95599 1.01185 1.01496 1.21258 0.94951 1.01368 0.94494 0.89462 1.21505 0.93701 1.00479 0.98274 1.22284 0.96887 1.04288 0.97441 1.24701 0.78470 0.77711 0.92646 1.90295 1.26856 1.28103 1.90206 1.22088 0.94468 1.02758 0.95850 0.90142 1.19126 0.96260 0.86658 0.98049 1.21366 0.92322 0.92968 1.49825 0.92362 1.24971 0.98250 0.95736 0.95126 1.69961 1.35298 0.97789 1.50248 0.86570 0.85829 0.78257 0.77689 1.19589 1.20917 1.20951 1.21641 0.94929 0.99442 0.97993 0.92978 0.92644 0.93199 0.92288 0.91479 0.87847 0.90531 0.95425 0.95502 0.92990 0.91237 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.19 37.16 0.34 -1.35 16 2 C -0.10 -1.50 2.45 -90.64 -0.22 -1.72 16 3 H 0.09 1.44 6.51 -51.93 -0.34 1.11 16 4 C -0.10 -1.42 5.21 -26.63 -0.14 -1.55 16 5 C -0.17 -2.91 5.87 -27.49 -0.16 -3.07 16 6 C 0.39 8.12 5.41 -28.48 -0.15 7.96 16 7 O -0.48 -11.49 17.89 5.99 0.11 -11.38 16 8 C -0.13 -2.74 2.60 -91.38 -0.24 -2.98 16 9 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 10 C 0.04 0.89 4.08 -27.88 -0.11 0.77 16 11 C -0.53 -14.89 8.61 -34.44 -0.30 -15.19 16 12 H 0.06 1.70 7.61 -52.49 -0.40 1.30 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 15 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 16 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 C -0.10 -1.66 4.69 -26.62 -0.12 -1.79 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.10 1.84 7.67 -51.93 -0.40 1.45 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.03 0.67 5.99 -51.93 -0.31 0.36 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 253.11 15.07 3.81 3.81 Total: -1.00 -30.65 253.11 -6.38 -37.02 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -4.81 Total: -3.68 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -1.21 Total: -17.29 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.74 Total: -25.49 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.11 Total: -11.38 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.65 -6.38 -37.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546812.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.321 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds