Wall clock time and date at job start Mon Mar 30 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.35973 * 2 1 4 4 C 1.52965 * 109.41189 * 119.82717 * 2 1 3 5 5 C 1.53229 * 109.41314 * 183.70887 * 4 2 1 6 6 C 1.51260 * 108.53957 * 305.36317 * 5 4 2 7 7 O 1.20765 * 120.85331 * 231.33096 * 6 5 4 8 8 C 1.51268 * 118.29991 * 51.34962 * 6 5 4 9 9 H 1.09004 * 109.62527 * 188.74895 * 8 6 5 10 10 C 1.52998 * 109.62516 * 68.36718 * 8 6 5 11 11 C 1.50703 * 109.47249 * 65.00033 * 10 8 6 12 12 H 1.07999 * 119.99760 * 0.02562 * 11 10 8 13 13 C 1.37871 * 120.00231 * 179.97438 * 11 10 8 14 14 N 1.31514 * 119.99745 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00316 * 180.02562 * 13 11 10 16 16 H 1.48511 * 109.46875 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47384 * 119.99777 * 15 13 11 18 18 H 1.48502 * 109.47192 * 240.00405 * 15 13 11 19 19 C 1.52991 * 109.43404 * 240.16868 * 2 1 3 20 20 H 1.09002 * 109.46786 * 300.17802 * 1 2 3 21 21 H 1.09000 * 109.46780 * 60.17234 * 1 2 3 22 22 H 1.08996 * 109.47447 * 180.17451 * 1 2 3 23 23 H 1.09002 * 109.48383 * 63.72107 * 4 2 1 24 24 H 1.08999 * 109.47882 * 303.69470 * 4 2 1 25 25 H 1.09000 * 109.62841 * 65.08371 * 5 4 2 26 26 H 1.09005 * 109.62497 * 185.64969 * 5 4 2 27 27 H 1.09005 * 109.47131 * 184.99810 * 10 8 6 28 28 H 1.08999 * 109.47452 * 305.00007 * 10 8 6 29 29 H 0.97003 * 119.99879 * 179.97438 * 14 13 11 30 30 H 1.09005 * 109.47498 * 56.32327 * 19 2 1 31 31 H 1.08998 * 109.47623 * 296.29367 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8913 1.0284 0.0000 4 6 2.0384 -0.7176 1.2516 5 6 3.5678 -0.6370 1.2990 6 6 4.1187 -1.1834 0.0006 7 8 4.9761 -2.0339 0.0007 8 6 3.5684 -0.6371 -1.2983 9 1 3.9438 -1.2294 -2.1328 10 6 4.0014 0.8206 -1.4669 11 6 5.5000 0.8861 -1.6121 12 1 6.0850 -0.0214 -1.5870 13 6 6.1240 2.1042 -1.7780 14 7 5.4115 3.2092 -1.8091 15 14 7.9815 2.1853 -1.9587 16 1 8.5457 0.8132 -1.8908 17 1 8.3254 2.7971 -3.2673 18 1 8.5500 3.0096 -0.8620 19 6 2.0390 -0.7177 -1.2516 20 1 -0.3633 0.5166 0.8884 21 1 -0.3633 0.5112 -0.8915 22 1 -0.3634 -1.0276 0.0031 23 1 1.7301 -1.7627 1.2219 24 1 1.6215 -0.2406 2.1386 25 1 3.8762 0.4015 1.4193 26 1 3.9400 -1.2313 2.1335 27 1 3.5315 1.2385 -2.3574 28 1 3.6958 1.3941 -0.5918 29 1 5.8506 4.0663 -1.9254 30 1 1.6225 -0.2406 -2.1388 31 1 1.7307 -1.7627 -1.2220 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075546812.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:35 Heat of formation + Delta-G solvation = -94.295145 kcal Electronic energy + Delta-G solvation = -12802.024687 eV Core-core repulsion = 10660.179164 eV Total energy + Delta-G solvation = -2141.845524 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.03736 -38.02449 -35.41428 -33.18006 -31.93175 -28.95208 -25.98253 -24.86445 -23.35771 -21.69513 -19.30451 -18.49206 -16.93931 -16.63438 -16.13078 -15.61056 -15.40952 -14.94150 -14.35680 -13.94668 -13.69694 -13.42119 -13.21367 -13.10401 -12.87008 -12.46036 -12.42225 -12.26661 -11.85034 -11.58221 -11.41227 -11.06798 -10.97260 -10.60645 -10.09728 -8.25470 -6.34768 1.15902 1.33120 1.34812 1.47753 2.36481 3.07832 3.34213 3.79612 3.90915 3.99539 4.22562 4.42922 4.48074 4.55273 4.69370 4.89027 4.96839 5.01974 5.06066 5.06886 5.14815 5.17904 5.37123 5.45755 5.51070 5.59356 5.65266 5.79517 6.19043 6.66546 6.80443 7.34255 8.85068 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.043071 B = 0.011126 C = 0.009893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.930137 B = 2516.106042 C = 2829.663021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 H 0.063 0.937 4 C -0.095 4.095 5 C -0.167 4.167 6 C 0.382 3.618 7 O -0.517 6.517 8 C -0.133 4.133 9 H 0.060 0.940 10 C 0.047 3.953 11 C -0.548 4.548 12 H 0.040 0.960 13 C 0.014 3.986 14 N -0.919 5.919 15 Si 0.949 3.051 16 H -0.277 1.277 17 H -0.272 1.272 18 H -0.273 1.273 19 C -0.097 4.097 20 H 0.067 0.933 21 H 0.054 0.946 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.008 0.992 28 H 0.021 0.979 29 H 0.266 0.734 30 H 0.072 0.928 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.756 -4.970 5.262 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 H 0.081 0.919 4 C -0.132 4.132 5 C -0.205 4.205 6 C 0.261 3.739 7 O -0.395 6.395 8 C -0.152 4.152 9 H 0.079 0.921 10 C 0.010 3.990 11 C -0.586 4.586 12 H 0.058 0.942 13 C -0.185 4.185 14 N -0.559 5.559 15 Si 0.774 3.226 16 H -0.202 1.202 17 H -0.197 1.197 18 H -0.198 1.198 19 C -0.134 4.134 20 H 0.086 0.914 21 H 0.073 0.927 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.115 0.885 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.026 0.974 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.310 -5.227 5.243 11.895 hybrid contribution 1.391 0.381 -0.458 1.513 sum -7.919 -4.846 4.786 10.445 Atomic orbital electron populations 1.21744 0.92793 1.02533 1.02334 1.21241 0.97235 0.99707 0.93933 0.91902 1.21547 0.90844 1.01836 0.99022 1.22296 0.99429 1.03334 0.95397 1.25234 0.77471 0.76851 0.94296 1.90274 1.28302 1.30039 1.90852 1.22003 0.98004 0.99631 0.95612 0.92105 1.18915 0.94211 0.89172 0.96689 1.21630 0.94224 0.92476 1.50280 0.94198 1.25716 1.02625 0.95425 0.94740 1.70035 1.37022 0.98266 1.50599 0.85637 0.80613 0.77968 0.78344 1.20171 1.19736 1.19789 1.21641 0.91148 1.01242 0.99386 0.91418 0.92672 0.91555 0.90529 0.88544 0.88901 0.88985 0.97403 0.96053 0.92504 0.90981 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.19 71.98 0.66 -2.09 16 2 C -0.10 -2.78 2.45 -10.81 -0.03 -2.81 16 3 H 0.06 2.02 6.51 -2.39 -0.02 2.01 16 4 C -0.10 -2.34 5.21 30.66 0.16 -2.18 16 5 C -0.17 -5.45 5.87 30.10 0.18 -5.28 16 6 C 0.38 16.01 5.41 29.46 0.16 16.17 16 7 O -0.52 -25.13 17.89 -1.47 -0.03 -25.16 16 8 C -0.13 -5.59 2.60 -11.28 -0.03 -5.62 16 9 H 0.06 2.73 8.14 -2.38 -0.02 2.71 16 10 C 0.05 2.39 4.08 29.85 0.12 2.51 16 11 C -0.55 -31.80 8.61 25.60 0.22 -31.58 16 12 H 0.04 2.41 7.61 -2.91 -0.02 2.39 16 13 C 0.01 0.81 5.46 84.65 0.46 1.28 16 14 N -0.92 -54.35 13.29 21.45 0.28 -54.06 16 15 Si 0.95 45.50 29.54 68.60 2.03 47.53 16 16 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 19 C -0.10 -3.02 4.69 30.67 0.14 -2.87 16 20 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 21 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.09 3.27 7.67 -2.39 -0.02 3.25 16 26 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 27 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 28 H 0.02 1.09 5.99 -2.39 -0.01 1.08 16 29 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -66.41 253.11 5.42 -60.99 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: 1.09 Total: 3.18 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 2.05 Total: -32.48 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.28 Total: -54.06 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.03 Total: -25.16 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -66.41 5.42 -60.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546812.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.307 kcal (2) G-P(sol) polarization free energy of solvation -66.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds