Wall clock time and date at job start Mon Mar 30 2020 02:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.36120 * 2 1 4 4 C 1.52965 * 109.41160 * 240.17626 * 2 1 3 5 5 C 1.53229 * 109.41314 * 303.50065 * 4 2 1 6 6 C 1.51260 * 108.53957 * 305.36317 * 5 4 2 7 7 O 1.20765 * 120.85331 * 231.33096 * 6 5 4 8 8 C 1.51268 * 118.29991 * 51.34962 * 6 5 4 9 9 H 1.09000 * 109.62599 * 68.36676 * 8 6 5 10 10 C 1.52999 * 109.62523 * 188.74711 * 8 6 5 11 11 C 1.50694 * 109.47295 * 294.99791 * 10 8 6 12 12 H 1.07998 * 120.00229 * 0.02562 * 11 10 8 13 13 C 1.37881 * 120.00532 * 180.02562 * 11 10 8 14 14 N 1.31515 * 119.99317 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00430 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47283 * 60.00027 * 15 13 11 17 17 H 1.48500 * 109.47277 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47187 * 299.99922 * 15 13 11 19 19 C 1.52991 * 109.41038 * 119.84947 * 2 1 3 20 20 H 1.08997 * 109.46944 * 179.82561 * 1 2 3 21 21 H 1.09004 * 109.46500 * 299.82263 * 1 2 3 22 22 H 1.08999 * 109.46845 * 59.82078 * 1 2 3 23 23 H 1.09002 * 109.48383 * 183.51285 * 4 2 1 24 24 H 1.08999 * 109.47882 * 63.48648 * 4 2 1 25 25 H 1.09000 * 109.62841 * 65.08371 * 5 4 2 26 26 H 1.09010 * 109.62184 * 185.45936 * 5 4 2 27 27 H 1.08998 * 109.47271 * 55.00533 * 10 8 6 28 28 H 1.09006 * 109.46972 * 175.00185 * 10 8 6 29 29 H 0.97005 * 119.99471 * 180.02562 * 14 13 11 30 30 H 1.09005 * 109.47498 * 296.51876 * 19 2 1 31 31 H 1.08997 * 109.48700 * 176.49408 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8914 1.0283 0.0000 4 6 2.0384 -0.7175 -1.2516 5 6 1.4553 -2.1337 -1.2990 6 6 1.7884 -2.8346 -0.0006 7 8 2.3065 -3.9255 -0.0009 8 6 1.4554 -2.1344 1.2982 9 1 0.3734 -2.0811 1.4185 10 6 2.0652 -2.9071 2.4696 11 6 1.4138 -4.2622 2.5710 12 1 0.6423 -4.5443 1.8699 13 6 1.8026 -5.1419 3.5589 14 7 2.7417 -4.7981 4.4130 15 14 0.9956 -6.8219 3.6842 16 1 1.2215 -7.5747 2.4242 17 1 1.5865 -7.5713 4.8219 18 1 -0.4632 -6.6550 3.9064 19 6 2.0385 -0.7182 1.2515 20 1 -0.3633 -1.0276 -0.0031 21 1 -0.3632 0.5111 0.8916 22 1 -0.3633 0.5166 -0.8884 23 1 3.1266 -0.7731 -1.2221 24 1 1.7265 -0.1661 -2.1386 25 1 0.3733 -2.0804 -1.4193 26 1 1.8901 -2.6808 -2.1357 27 1 3.1358 -3.0299 2.3058 28 1 1.9001 -2.3545 3.3946 29 1 3.0155 -5.4172 5.1078 30 1 1.7265 -0.1671 2.1388 31 1 3.1266 -0.7737 1.2221 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075546814.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:38 Heat of formation + Delta-G solvation = -66.433348 kcal Electronic energy + Delta-G solvation = -12834.493949 eV Core-core repulsion = 10693.856604 eV Total energy + Delta-G solvation = -2140.637345 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.56729 -36.49063 -33.42762 -31.36554 -29.89398 -26.90432 -25.87689 -23.10701 -21.37992 -19.89508 -17.65834 -16.15619 -15.46577 -15.03876 -14.42250 -14.28426 -13.91492 -13.68384 -12.85081 -12.18601 -12.02938 -11.85359 -11.53216 -11.34254 -11.04251 -10.84340 -10.76107 -10.42761 -10.36038 -10.25315 -9.97032 -9.33969 -8.93971 -8.41865 -8.15695 -5.86778 -3.84897 2.89503 3.42163 3.45569 3.50169 4.58094 4.79023 4.96672 5.05766 5.11693 5.49749 5.51859 5.56587 5.65172 5.79512 5.86714 5.99763 6.08268 6.14469 6.16759 6.29184 6.34829 6.45991 6.69326 6.74057 7.03171 7.68732 7.83756 8.09118 8.47799 8.53990 9.15464 9.75714 11.25356 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.054225 B = 0.010188 C = 0.009598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.240373 B = 2747.564691 C = 2916.525243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 H 0.069 0.931 4 C -0.105 4.105 5 C -0.175 4.175 6 C 0.355 3.645 7 O -0.426 6.426 8 C -0.130 4.130 9 H 0.090 0.910 10 C 0.034 3.966 11 C -0.496 4.496 12 H 0.049 0.951 13 C 0.055 3.945 14 N -0.901 5.901 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.279 1.279 19 C -0.105 4.105 20 H 0.063 0.937 21 H 0.055 0.945 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.019 0.981 28 H 0.021 0.979 29 H 0.258 0.742 30 H 0.068 0.932 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.536 9.981 -9.291 14.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 H 0.087 0.913 4 C -0.142 4.142 5 C -0.213 4.213 6 C 0.227 3.773 7 O -0.296 6.296 8 C -0.149 4.149 9 H 0.108 0.892 10 C -0.003 4.003 11 C -0.534 4.534 12 H 0.068 0.932 13 C -0.145 4.145 14 N -0.541 5.541 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.143 4.143 20 H 0.082 0.918 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.109 0.891 26 H 0.095 0.905 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.150 9.312 -9.138 13.422 hybrid contribution -0.458 -0.904 0.084 1.017 sum -3.608 8.408 -9.054 12.872 Atomic orbital electron populations 1.21950 0.95359 1.02377 1.01146 1.21171 0.96111 0.99000 0.95201 0.91290 1.21495 1.00521 0.94292 0.97929 1.22419 1.02821 0.97523 0.98519 1.24752 0.74871 0.86015 0.91664 1.90421 1.30400 1.19409 1.89325 1.22015 1.01845 0.94612 0.96398 0.89178 1.19027 0.96320 0.94239 0.90685 1.21021 1.20059 0.99631 1.12702 0.93227 1.24935 0.95357 0.98249 0.95977 1.69949 1.30202 1.36118 1.17867 0.86694 0.79419 0.84691 0.77417 1.20313 1.21405 1.20445 1.21645 1.00485 0.95194 0.96938 0.91849 0.92631 0.93239 0.91799 0.91707 0.89144 0.90487 0.96254 0.96062 0.93195 0.91378 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.31 37.16 0.31 -1.45 16 2 C -0.10 -1.21 3.18 -90.64 -0.29 -1.50 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 4 C -0.10 -1.29 5.51 -26.63 -0.15 -1.44 16 5 C -0.17 -2.57 5.64 -27.49 -0.16 -2.72 16 6 C 0.35 7.19 6.31 -28.48 -0.18 7.01 16 7 O -0.43 -10.72 15.69 5.99 0.09 -10.63 16 8 C -0.13 -2.63 1.89 -91.38 -0.17 -2.80 16 9 H 0.09 1.75 6.68 -51.93 -0.35 1.41 16 10 C 0.03 0.90 4.16 -27.89 -0.12 0.79 16 11 C -0.50 -14.61 7.64 -34.44 -0.26 -14.87 16 12 H 0.05 1.45 7.50 -52.49 -0.39 1.06 16 13 C 0.05 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -28.14 13.29 55.43 0.74 -27.40 16 15 Si 0.89 22.96 29.54 -169.99 -5.02 17.94 16 16 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 C -0.10 -1.69 4.81 -26.62 -0.13 -1.82 16 20 H 0.06 0.80 4.91 -51.93 -0.26 0.55 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.09 1.17 6.67 -51.93 -0.35 0.83 16 26 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 27 H 0.02 0.56 8.11 -51.93 -0.42 0.14 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 248.20 15.07 3.74 3.74 Total: -1.00 -32.92 248.20 -6.39 -39.31 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: -4.70 Total: -5.70 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -1.24 Total: -17.26 kcal Atomic # 7 Polarization: -28.14 SS G_CDS: 0.74 Total: -27.40 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -32.92 -6.39 -39.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546814.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.126 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds