Wall clock time and date at job start Mon Mar 30 2020 02:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.36120 * 2 1 4 4 C 1.52965 * 109.41160 * 240.17626 * 2 1 3 5 5 C 1.53229 * 109.41314 * 303.50065 * 4 2 1 6 6 C 1.51260 * 108.53957 * 305.36317 * 5 4 2 7 7 O 1.20765 * 120.85331 * 231.33096 * 6 5 4 8 8 C 1.51268 * 118.29991 * 51.34962 * 6 5 4 9 9 H 1.09000 * 109.62599 * 68.36676 * 8 6 5 10 10 C 1.52999 * 109.62523 * 188.74711 * 8 6 5 11 11 C 1.50694 * 109.47295 * 294.99791 * 10 8 6 12 12 H 1.07998 * 120.00229 * 0.02562 * 11 10 8 13 13 C 1.37881 * 120.00532 * 180.02562 * 11 10 8 14 14 N 1.31515 * 119.99317 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00430 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47283 * 60.00027 * 15 13 11 17 17 H 1.48500 * 109.47277 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47187 * 299.99922 * 15 13 11 19 19 C 1.52991 * 109.41038 * 119.84947 * 2 1 3 20 20 H 1.08997 * 109.46944 * 179.82561 * 1 2 3 21 21 H 1.09004 * 109.46500 * 299.82263 * 1 2 3 22 22 H 1.08999 * 109.46845 * 59.82078 * 1 2 3 23 23 H 1.09002 * 109.48383 * 183.51285 * 4 2 1 24 24 H 1.08999 * 109.47882 * 63.48648 * 4 2 1 25 25 H 1.09000 * 109.62841 * 65.08371 * 5 4 2 26 26 H 1.09010 * 109.62184 * 185.45936 * 5 4 2 27 27 H 1.08998 * 109.47271 * 55.00533 * 10 8 6 28 28 H 1.09006 * 109.46972 * 175.00185 * 10 8 6 29 29 H 0.97005 * 119.99471 * 180.02562 * 14 13 11 30 30 H 1.09005 * 109.47498 * 296.51876 * 19 2 1 31 31 H 1.08997 * 109.48700 * 176.49408 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8914 1.0283 0.0000 4 6 2.0384 -0.7175 -1.2516 5 6 1.4553 -2.1337 -1.2990 6 6 1.7884 -2.8346 -0.0006 7 8 2.3065 -3.9255 -0.0009 8 6 1.4554 -2.1344 1.2982 9 1 0.3734 -2.0811 1.4185 10 6 2.0652 -2.9071 2.4696 11 6 1.4138 -4.2622 2.5710 12 1 0.6423 -4.5443 1.8699 13 6 1.8026 -5.1419 3.5589 14 7 2.7417 -4.7981 4.4130 15 14 0.9956 -6.8219 3.6842 16 1 1.2215 -7.5747 2.4242 17 1 1.5865 -7.5713 4.8219 18 1 -0.4632 -6.6550 3.9064 19 6 2.0385 -0.7182 1.2515 20 1 -0.3633 -1.0276 -0.0031 21 1 -0.3632 0.5111 0.8916 22 1 -0.3633 0.5166 -0.8884 23 1 3.1266 -0.7731 -1.2221 24 1 1.7265 -0.1661 -2.1386 25 1 0.3733 -2.0804 -1.4193 26 1 1.8901 -2.6808 -2.1357 27 1 3.1358 -3.0299 2.3058 28 1 1.9001 -2.3545 3.3946 29 1 3.0155 -5.4172 5.1078 30 1 1.7265 -0.1671 2.1388 31 1 3.1266 -0.7737 1.2221 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075546814.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:38 Heat of formation + Delta-G solvation = -87.339003 kcal Electronic energy + Delta-G solvation = -12835.400486 eV Core-core repulsion = 10693.856604 eV Total energy + Delta-G solvation = -2141.543883 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.07278 -37.92056 -35.48859 -33.21402 -31.14146 -28.70731 -27.07203 -24.97610 -22.97152 -21.29748 -19.09730 -18.35591 -16.92673 -16.63153 -16.35317 -15.62253 -15.21382 -15.14660 -14.17840 -14.10938 -13.63419 -13.36497 -13.15445 -12.81660 -12.67741 -12.53436 -12.25427 -12.18006 -11.87992 -11.50299 -11.41800 -11.20616 -10.83151 -10.58317 -9.92764 -8.18158 -6.23927 1.29625 1.33192 1.38310 1.45190 2.40385 3.14715 3.36662 3.86058 3.98355 4.02252 4.25186 4.45063 4.49370 4.54681 4.65805 4.87703 4.92286 5.06994 5.09552 5.15359 5.21245 5.29727 5.37305 5.45689 5.49656 5.59935 5.70377 5.81990 6.24118 6.84706 6.92329 7.40830 8.94210 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.054225 B = 0.010188 C = 0.009598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.240373 B = 2747.564691 C = 2916.525243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 H 0.097 0.903 4 C -0.102 4.102 5 C -0.163 4.163 6 C 0.351 3.649 7 O -0.489 6.489 8 C -0.130 4.130 9 H 0.101 0.899 10 C 0.038 3.962 11 C -0.510 4.510 12 H 0.046 0.954 13 C -0.006 4.006 14 N -0.937 5.937 15 Si 0.957 3.043 16 H -0.279 1.279 17 H -0.279 1.279 18 H -0.261 1.261 19 C -0.101 4.101 20 H 0.049 0.951 21 H 0.056 0.944 22 H 0.077 0.923 23 H 0.057 0.943 24 H 0.105 0.895 25 H 0.117 0.883 26 H 0.084 0.916 27 H -0.021 1.021 28 H 0.001 0.999 29 H 0.261 0.739 30 H 0.072 0.928 31 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.084 11.251 -11.013 16.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 H 0.116 0.884 4 C -0.139 4.139 5 C -0.200 4.200 6 C 0.228 3.772 7 O -0.364 6.364 8 C -0.148 4.148 9 H 0.119 0.881 10 C 0.001 3.999 11 C -0.549 4.549 12 H 0.065 0.935 13 C -0.203 4.203 14 N -0.579 5.579 15 Si 0.782 3.218 16 H -0.205 1.205 17 H -0.204 1.204 18 H -0.185 1.185 19 C -0.139 4.139 20 H 0.068 0.932 21 H 0.075 0.925 22 H 0.096 0.904 23 H 0.076 0.924 24 H 0.123 0.877 25 H 0.135 0.865 26 H 0.102 0.898 27 H -0.003 1.003 28 H 0.020 0.980 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.718 10.616 -10.868 15.909 hybrid contribution 0.045 -1.257 0.648 1.415 sum -4.673 9.359 -10.220 14.625 Atomic orbital electron populations 1.21958 0.94252 1.01940 1.02722 1.21164 0.96938 0.99774 0.92831 0.88447 1.21568 1.00149 0.92742 0.99456 1.22382 1.04635 0.98333 0.94674 1.25498 0.72716 0.85014 0.93971 1.90400 1.33549 1.22104 1.90339 1.21946 1.02101 0.96415 0.94381 0.88088 1.18874 0.94128 0.94174 0.92706 1.21394 1.20006 1.01080 1.12380 0.93526 1.25887 0.96077 1.02565 0.95736 1.70081 1.31599 1.37633 1.18549 0.85619 0.79289 0.79494 0.77369 1.20479 1.20432 1.18545 1.21636 0.99591 0.92854 0.99823 0.93246 0.92457 0.90403 0.92383 0.87673 0.86513 0.89754 1.00269 0.98039 0.93023 0.90925 0.93307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.31 71.98 0.60 -2.30 16 2 C -0.09 -1.90 3.18 -10.81 -0.03 -1.94 16 3 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.10 -2.10 5.51 30.66 0.17 -1.93 16 5 C -0.16 -4.33 5.64 30.10 0.17 -4.16 16 6 C 0.35 14.26 6.31 29.46 0.19 14.45 16 7 O -0.49 -25.50 15.69 -1.47 -0.02 -25.52 16 8 C -0.13 -5.31 1.89 -11.28 -0.02 -5.33 16 9 H 0.10 3.90 6.68 -2.39 -0.02 3.89 16 10 C 0.04 2.12 4.16 29.85 0.12 2.25 16 11 C -0.51 -31.08 7.64 25.60 0.20 -30.88 16 12 H 0.05 2.79 7.50 -2.91 -0.02 2.77 16 13 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 14 N -0.94 -60.43 13.29 21.45 0.28 -60.15 16 15 Si 0.96 47.87 29.54 68.60 2.03 49.90 16 16 H -0.28 -13.94 7.11 99.48 0.71 -13.24 16 17 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 18 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 19 C -0.10 -3.17 4.81 30.67 0.15 -3.02 16 20 H 0.05 1.08 4.91 -2.39 -0.01 1.07 16 21 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.12 2.56 6.67 -2.39 -0.02 2.55 16 26 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 27 H -0.02 -1.32 8.11 -2.39 -0.02 -1.34 16 28 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 29 H 0.26 15.85 8.31 -92.70 -0.77 15.08 16 30 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -74.96 248.20 5.38 -69.58 By element: Atomic # 1 Polarization: -2.10 SS G_CDS: 1.09 Total: -1.01 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 2.00 Total: -32.80 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.28 Total: -60.15 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.02 Total: -25.52 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -74.96 5.38 -69.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546814.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.756 kcal (2) G-P(sol) polarization free energy of solvation -74.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds