Wall clock time and date at job start Mon Mar 30 2020 02:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00389 * 2 1 4 4 H 1.48495 * 109.46929 * 240.00459 * 3 2 1 5 5 H 1.48503 * 109.46848 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47355 * 120.00229 * 3 2 1 7 7 C 1.37882 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99864 * 178.57099 * 7 2 1 9 9 C 1.50700 * 120.00279 * 358.57760 * 7 2 1 10 10 C 1.52997 * 115.54989 * 84.94838 * 9 7 2 11 11 O 1.42905 * 109.47351 * 39.89626 * 10 9 7 12 12 C 1.42895 * 113.99898 * 180.02562 * 11 10 9 13 13 C 1.53781 * 113.61242 * 247.49372 * 12 11 10 14 14 C 1.53777 * 87.08416 * 220.02243 * 13 12 11 15 15 C 1.53785 * 113.61190 * 150.00011 * 12 11 10 16 16 C 1.52997 * 117.51813 * 230.65457 * 9 7 2 17 17 C 1.52995 * 60.00007 * 107.47770 * 16 9 7 18 18 H 0.97001 * 119.99509 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47266 * 279.89606 * 10 9 7 20 20 H 1.08999 * 109.47258 * 159.89523 * 10 9 7 21 21 H 1.08994 * 112.85508 * 18.80019 * 12 11 10 22 22 H 1.09003 * 113.61633 * 334.57103 * 13 12 11 23 23 H 1.08997 * 113.61891 * 105.46777 * 13 12 11 24 24 H 1.09002 * 113.61441 * 270.88483 * 14 13 12 25 25 H 1.09002 * 113.61936 * 139.98257 * 14 13 12 26 26 H 1.08995 * 113.61297 * 254.52315 * 15 12 11 27 27 H 1.09000 * 113.61657 * 25.34442 * 15 12 11 28 28 H 1.09001 * 117.49308 * 214.96950 * 16 9 7 29 29 H 1.09003 * 117.49625 * 359.97438 * 16 9 7 30 30 H 1.09003 * 117.49868 * 252.51068 * 17 16 9 31 31 H 1.09003 * 117.51687 * 107.48274 * 17 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0842 -1.1943 -0.0239 9 6 1.2513 -2.4990 0.0313 10 6 0.7867 -3.0261 -1.3278 11 8 1.8083 -2.7997 -2.3011 12 6 1.4731 -3.2573 -3.6127 13 6 2.3249 -4.4467 -4.0866 14 6 2.3546 -3.7736 -5.4689 15 6 2.1307 -2.4397 -4.7370 16 6 1.6655 -3.5288 1.0843 17 6 0.3490 -2.7646 1.2380 18 1 -0.4849 0.8401 0.0004 19 1 -0.1227 -2.5055 -1.6279 20 1 0.5859 -4.0948 -1.2538 21 1 0.4017 -3.4041 -3.7489 22 1 3.3022 -4.5025 -3.6070 23 1 1.7920 -5.3975 -4.0752 24 1 1.5244 -4.0628 -6.1133 25 1 3.3218 -3.8414 -5.9670 26 1 1.4409 -1.7702 -5.2508 27 1 3.0541 -1.9455 -4.4349 28 1 1.6069 -4.5817 0.8088 29 1 2.4832 -3.2626 1.7541 30 1 0.3004 -1.9956 2.0090 31 1 -0.5759 -3.3145 1.0635 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862524.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:45 Heat of formation + Delta-G solvation = -5.763943 kcal Electronic energy + Delta-G solvation = -12604.658730 eV Core-core repulsion = 10466.652208 eV Total energy + Delta-G solvation = -2138.006523 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.64078 -36.64825 -34.42856 -31.80020 -26.38281 -25.30007 -25.02613 -23.73623 -21.03175 -19.46286 -18.82945 -16.55732 -15.72216 -15.05219 -14.56439 -14.06124 -14.04027 -13.22119 -12.69402 -12.07759 -11.82843 -11.62230 -11.21821 -10.93671 -10.84662 -10.62923 -10.40761 -10.32379 -10.08642 -9.96275 -9.34358 -8.88347 -8.51712 -8.30544 -7.93650 -5.91891 -3.94194 3.38967 3.42071 3.46255 4.49659 4.61464 4.95701 5.03563 5.25405 5.32436 5.38861 5.44870 5.75352 5.90080 6.10313 6.13687 6.19528 6.30328 6.35013 6.44896 6.52711 6.64616 6.76435 6.79753 6.95523 7.13365 7.46866 7.55604 8.00345 8.30904 8.61537 9.04413 9.69214 11.18206 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.031291 B = 0.012222 C = 0.009703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.611387 B = 2290.423639 C = 2884.939896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.471 4.471 8 H 0.058 0.942 9 C 0.042 3.958 10 C 0.108 3.892 11 O -0.345 6.345 12 C 0.061 3.939 13 C -0.158 4.158 14 C -0.143 4.143 15 C -0.137 4.137 16 C -0.212 4.212 17 C -0.151 4.151 18 H 0.258 0.742 19 H 0.045 0.955 20 H 0.013 0.987 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.458 -6.029 -6.680 9.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.509 4.509 8 H 0.077 0.923 9 C 0.042 3.958 10 C 0.032 3.968 11 O -0.263 6.263 12 C 0.001 3.999 13 C -0.196 4.196 14 C -0.180 4.180 15 C -0.175 4.175 16 C -0.249 4.249 17 C -0.189 4.189 18 H 0.067 0.933 19 H 0.063 0.937 20 H 0.032 0.968 21 H 0.093 0.907 22 H 0.105 0.895 23 H 0.079 0.921 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.467 -5.803 -6.625 8.928 hybrid contribution 0.055 0.765 -0.075 0.771 sum 1.522 -5.038 -6.699 8.519 Atomic orbital electron populations 1.69992 1.05803 1.26257 1.50513 1.24940 0.94817 0.98771 0.94872 0.86685 0.79614 0.83214 0.78620 1.20179 1.21473 1.20393 1.20245 0.92324 0.88259 1.50079 0.92342 1.18761 0.98187 0.93860 0.84985 1.22092 0.90053 0.94727 0.89949 1.88111 1.41409 1.81217 1.15578 1.23506 0.97192 0.94086 0.85084 1.23488 1.01812 0.98012 0.96261 1.22652 1.01523 0.97579 0.96265 1.23172 1.01923 0.96382 0.95990 1.23069 0.99223 0.95593 1.06999 1.22496 0.91449 1.01395 1.03559 0.93260 0.93666 0.96840 0.90732 0.89483 0.92127 0.90593 0.91405 0.91663 0.89248 0.91814 0.90412 0.89687 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 12.80 55.43 0.71 -25.08 16 2 C 0.07 1.92 5.41 -17.82 -0.10 1.82 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.47 -13.42 8.24 -34.44 -0.28 -13.71 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.04 1.10 1.81 -155.66 -0.28 0.82 16 10 C 0.11 2.58 5.84 37.16 0.22 2.79 16 11 O -0.35 -8.06 9.74 -35.23 -0.34 -8.40 16 12 C 0.06 1.10 4.31 -25.92 -0.11 0.99 16 13 C -0.16 -2.38 7.91 -25.92 -0.21 -2.58 16 14 C -0.14 -1.86 8.08 -25.92 -0.21 -2.07 16 15 C -0.14 -2.19 7.91 -25.91 -0.21 -2.40 16 16 C -0.21 -4.83 9.88 -26.73 -0.26 -5.09 16 17 C -0.15 -3.66 9.33 -26.74 -0.25 -3.91 16 18 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 19 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 20 H 0.01 0.29 7.95 -51.93 -0.41 -0.12 16 21 H 0.07 1.28 7.87 -51.93 -0.41 0.87 16 22 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.06 1.31 8.08 -51.93 -0.42 0.89 16 29 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 30 H 0.08 2.18 8.14 -51.93 -0.42 1.75 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 263.57 15.07 3.97 3.97 Total: -1.00 -29.58 263.57 -7.39 -36.97 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.01 Total: -1.04 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -1.69 Total: -23.34 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.71 Total: -25.08 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.34 Total: -8.40 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.58 -7.39 -36.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862524.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.206 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds