Wall clock time and date at job start Mon Mar 30 2020 02:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00389 * 2 1 4 4 H 1.48495 * 109.46929 * 240.00459 * 3 2 1 5 5 H 1.48503 * 109.46848 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47355 * 120.00229 * 3 2 1 7 7 C 1.37882 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99864 * 178.57099 * 7 2 1 9 9 C 1.50700 * 120.00279 * 358.57760 * 7 2 1 10 10 C 1.52997 * 115.54989 * 84.94838 * 9 7 2 11 11 O 1.42905 * 109.47351 * 39.89626 * 10 9 7 12 12 C 1.42895 * 113.99898 * 180.02562 * 11 10 9 13 13 C 1.53781 * 113.61242 * 247.49372 * 12 11 10 14 14 C 1.53777 * 87.08416 * 220.02243 * 13 12 11 15 15 C 1.53785 * 113.61190 * 150.00011 * 12 11 10 16 16 C 1.52997 * 117.51813 * 230.65457 * 9 7 2 17 17 C 1.52995 * 60.00007 * 107.47770 * 16 9 7 18 18 H 0.97001 * 119.99509 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47266 * 279.89606 * 10 9 7 20 20 H 1.08999 * 109.47258 * 159.89523 * 10 9 7 21 21 H 1.08994 * 112.85508 * 18.80019 * 12 11 10 22 22 H 1.09003 * 113.61633 * 334.57103 * 13 12 11 23 23 H 1.08997 * 113.61891 * 105.46777 * 13 12 11 24 24 H 1.09002 * 113.61441 * 270.88483 * 14 13 12 25 25 H 1.09002 * 113.61936 * 139.98257 * 14 13 12 26 26 H 1.08995 * 113.61297 * 254.52315 * 15 12 11 27 27 H 1.09000 * 113.61657 * 25.34442 * 15 12 11 28 28 H 1.09001 * 117.49308 * 214.96950 * 16 9 7 29 29 H 1.09003 * 117.49625 * 359.97438 * 16 9 7 30 30 H 1.09003 * 117.49868 * 252.51068 * 17 16 9 31 31 H 1.09003 * 117.51687 * 107.48274 * 17 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0842 -1.1943 -0.0239 9 6 1.2513 -2.4990 0.0313 10 6 0.7867 -3.0261 -1.3278 11 8 1.8083 -2.7997 -2.3011 12 6 1.4731 -3.2573 -3.6127 13 6 2.3249 -4.4467 -4.0866 14 6 2.3546 -3.7736 -5.4689 15 6 2.1307 -2.4397 -4.7370 16 6 1.6655 -3.5288 1.0843 17 6 0.3490 -2.7646 1.2380 18 1 -0.4849 0.8401 0.0004 19 1 -0.1227 -2.5055 -1.6279 20 1 0.5859 -4.0948 -1.2538 21 1 0.4017 -3.4041 -3.7489 22 1 3.3022 -4.5025 -3.6070 23 1 1.7920 -5.3975 -4.0752 24 1 1.5244 -4.0628 -6.1133 25 1 3.3218 -3.8414 -5.9670 26 1 1.4409 -1.7702 -5.2508 27 1 3.0541 -1.9455 -4.4349 28 1 1.6069 -4.5817 0.8088 29 1 2.4832 -3.2626 1.7541 30 1 0.3004 -1.9956 2.0090 31 1 -0.5759 -3.3145 1.0635 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862524.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:45 Heat of formation + Delta-G solvation = -22.519803 kcal Electronic energy + Delta-G solvation = -12605.385319 eV Core-core repulsion = 10466.652208 eV Total energy + Delta-G solvation = -2138.733111 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.05626 -38.43579 -36.07800 -33.94410 -28.22360 -27.10374 -26.48063 -25.10544 -22.90994 -21.21054 -20.33574 -18.33422 -17.49516 -16.70000 -16.33076 -15.80431 -15.73431 -14.74154 -14.54626 -13.65185 -13.33399 -13.21014 -12.99666 -12.82524 -12.54890 -12.35791 -12.12502 -12.03513 -11.55268 -11.29828 -11.18744 -10.86061 -10.39885 -10.20305 -9.82030 -8.07130 -6.15012 1.40641 1.42619 1.49586 2.45125 3.04441 3.22759 3.52934 3.76246 3.80794 4.02161 4.04536 4.37432 4.48927 4.51367 4.62421 4.75843 4.87068 4.90099 4.94857 5.02375 5.06352 5.08314 5.23331 5.33288 5.46803 5.59734 5.63972 5.80133 6.40517 6.74802 6.89604 7.50732 9.01947 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.031291 B = 0.012222 C = 0.009703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.611387 B = 2290.423639 C = 2884.939896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.022 3.978 3 Si 0.947 3.053 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.488 4.488 8 H 0.043 0.957 9 C 0.004 3.996 10 C 0.121 3.879 11 O -0.377 6.377 12 C 0.035 3.965 13 C -0.151 4.151 14 C -0.120 4.120 15 C -0.145 4.145 16 C -0.188 4.188 17 C -0.151 4.151 18 H 0.258 0.742 19 H 0.021 0.979 20 H 0.038 0.962 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.841 -6.969 -7.664 10.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.177 4.177 3 Si 0.773 3.227 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.004 3.996 10 C 0.044 3.956 11 O -0.296 6.296 12 C -0.023 4.023 13 C -0.189 4.189 14 C -0.157 4.157 15 C -0.182 4.182 16 C -0.225 4.225 17 C -0.189 4.189 18 H 0.067 0.933 19 H 0.039 0.961 20 H 0.056 0.944 21 H 0.099 0.901 22 H 0.095 0.905 23 H 0.098 0.902 24 H 0.117 0.883 25 H 0.105 0.895 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.858 -6.753 -7.612 10.344 hybrid contribution -0.053 1.033 0.213 1.056 sum 1.805 -5.719 -7.399 9.524 Atomic orbital electron populations 1.70089 1.06831 1.26841 1.51278 1.25609 0.95651 1.01703 0.94713 0.85784 0.78560 0.79673 0.78638 1.20158 1.20788 1.19696 1.20458 0.91866 0.90124 1.50114 0.93893 1.18976 0.99670 0.94259 0.86704 1.21838 0.89082 0.95500 0.89193 1.88056 1.41659 1.82276 1.17580 1.24013 0.98427 0.96603 0.83273 1.23420 1.00692 0.97710 0.97059 1.22616 1.03497 0.94219 0.95401 1.23225 1.01078 0.98003 0.95911 1.23075 0.98075 0.96456 1.04848 1.22405 0.92839 1.01404 1.02233 0.93330 0.96124 0.94445 0.90109 0.90467 0.90248 0.88252 0.89539 0.91116 0.90918 0.88891 0.90529 0.91925 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.64 12.80 21.45 0.27 -53.36 16 2 C 0.02 1.28 5.41 84.66 0.46 1.74 16 3 Si 0.95 45.41 29.54 68.60 2.03 47.43 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.49 -28.17 8.24 25.60 0.21 -27.96 16 8 H 0.04 2.53 7.81 -2.91 -0.02 2.51 16 9 C 0.00 0.22 1.81 -52.93 -0.10 0.12 16 10 C 0.12 5.72 5.84 71.98 0.42 6.14 16 11 O -0.38 -17.63 9.74 -148.98 -1.45 -19.08 16 12 C 0.03 1.24 4.31 31.12 0.13 1.37 16 13 C -0.15 -4.20 7.91 31.12 0.25 -3.95 16 14 C -0.12 -2.75 8.08 31.12 0.25 -2.50 16 15 C -0.14 -4.46 7.91 31.12 0.25 -4.22 16 16 C -0.19 -8.29 9.88 30.59 0.30 -7.99 16 17 C -0.15 -7.25 9.33 30.59 0.29 -6.97 16 18 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 19 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 20 H 0.04 1.56 7.95 -2.39 -0.02 1.54 16 21 H 0.08 2.70 7.87 -2.39 -0.02 2.68 16 22 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.09 3.55 8.08 -2.39 -0.02 3.53 16 29 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 30 H 0.06 3.24 8.14 -2.39 -0.02 3.22 16 31 H 0.08 3.42 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -63.20 263.57 4.39 -58.81 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.08 Total: 10.41 kcal Atomic # 6 Polarization: -46.67 SS G_CDS: 2.46 Total: -44.21 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.27 Total: -53.36 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -1.45 Total: -19.08 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -63.20 4.39 -58.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862524.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.293 kcal (2) G-P(sol) polarization free energy of solvation -63.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds