Wall clock time and date at job start Mon Mar 30 2020 01:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30826 * 125.96202 * 2 1 4 4 C 1.33243 * 109.82890 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.52403 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47211 * 65.00676 * 5 4 3 7 7 N 1.46899 * 109.47483 * 305.00195 * 5 4 3 8 8 C 1.50702 * 109.46869 * 185.00232 * 5 4 3 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 5 4 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 5 4 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 5 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 5 13 13 H 1.48504 * 109.47196 * 60.00645 * 12 10 8 14 14 H 1.48504 * 109.46887 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47679 * 300.00280 * 12 10 8 16 16 N 1.30707 * 108.94728 * 0.27036 * 4 3 2 17 17 N 1.34431 * 125.95910 * 179.97438 * 2 1 3 18 18 H 0.96996 * 126.82604 * 0.02562 * 17 2 1 19 19 H 1.09010 * 109.47239 * 90.00209 * 1 2 3 20 20 H 1.09001 * 109.47377 * 209.99980 * 1 2 3 21 21 H 1.08997 * 109.47633 * 330.00206 * 1 2 3 22 22 H 1.09001 * 109.47094 * 179.97438 * 6 5 4 23 23 H 1.09003 * 109.46851 * 299.99806 * 6 5 4 24 24 H 1.09003 * 109.47532 * 59.99881 * 6 5 4 25 25 H 1.00903 * 111.00048 * 300.00270 * 7 5 4 26 26 H 1.00904 * 110.99882 * 63.95460 * 7 5 4 27 27 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0589 0.0000 4 6 3.5552 0.6887 0.0006 5 6 4.7372 1.6236 0.0002 6 6 4.7588 2.4189 1.3070 7 7 4.6287 2.5497 -1.1349 8 6 6.0092 0.8249 -0.1228 9 1 5.9661 -0.2519 -0.1941 10 6 7.2279 1.4694 -0.1507 11 7 7.2804 2.7806 -0.0644 12 14 8.8041 0.4799 -0.3110 13 1 8.7774 -0.2918 -1.5795 14 1 9.9686 1.4015 -0.3162 15 1 8.9197 -0.4565 0.8358 16 7 3.6194 -0.6168 -0.0049 17 7 2.2964 -1.0881 0.0005 18 1 2.0093 -2.0146 0.0006 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3634 0.8899 0.5138 22 1 5.6139 3.0947 1.3069 23 1 3.8387 2.9965 1.3960 24 1 4.8393 1.7317 2.1493 25 1 4.6125 2.0483 -2.0104 26 1 3.8169 3.1418 -1.0423 27 1 8.1378 3.2340 -0.0836 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084330408.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:08 Heat of formation + Delta-G solvation = 60.337623 kcal Electronic energy + Delta-G solvation = -12491.081954 eV Core-core repulsion = 10284.694218 eV Total energy + Delta-G solvation = -2206.387736 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.92949 -37.47265 -33.91348 -33.22434 -32.62082 -29.56027 -28.71040 -27.04264 -24.08103 -22.05054 -20.62654 -18.61873 -17.93115 -16.73156 -16.52367 -15.84798 -15.45830 -14.97589 -14.47078 -13.70422 -13.63399 -13.33788 -12.79872 -12.65742 -12.53442 -12.46835 -12.28191 -11.90544 -11.21060 -10.90852 -10.67689 -10.44278 -10.26517 -9.07616 -7.88881 -6.09821 0.81693 1.46930 1.47573 1.55311 1.96260 2.07213 2.50828 3.30442 3.33742 3.94198 4.13430 4.35486 4.72746 4.77164 4.97396 5.06239 5.10053 5.29459 5.51415 5.56392 5.82843 5.99023 6.26339 6.43166 6.66448 7.06326 7.21261 7.39777 7.60441 9.11049 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.057744 B = 0.011162 C = 0.009989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.782641 B = 2507.945277 C = 2802.466432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.269 3.731 3 N -0.576 5.576 4 C 0.208 3.792 5 C 0.324 3.676 6 C -0.105 4.105 7 N -0.796 5.796 8 C -0.541 4.541 9 H 0.049 0.951 10 C 0.043 3.957 11 N -0.868 5.868 12 Si 0.947 3.053 13 H -0.279 1.279 14 H -0.281 1.281 15 H -0.278 1.278 16 N -0.340 5.340 17 N -0.490 5.490 18 H 0.449 0.551 19 H 0.107 0.893 20 H 0.112 0.888 21 H 0.098 0.902 22 H 0.077 0.923 23 H 0.028 0.972 24 H 0.019 0.981 25 H 0.317 0.683 26 H 0.316 0.684 27 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.618 -5.785 0.001 13.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.009 4.009 3 N -0.306 5.306 4 C -0.077 4.077 5 C 0.230 3.770 6 C -0.165 4.165 7 N -0.322 5.322 8 C -0.580 4.580 9 H 0.068 0.932 10 C -0.161 4.161 11 N -0.503 5.503 12 Si 0.773 3.227 13 H -0.205 1.205 14 H -0.206 1.206 15 H -0.204 1.204 16 N -0.169 5.169 17 N -0.210 5.210 18 H 0.297 0.703 19 H 0.125 0.875 20 H 0.130 0.870 21 H 0.117 0.883 22 H 0.096 0.904 23 H 0.047 0.953 24 H 0.038 0.962 25 H 0.128 0.872 26 H 0.127 0.873 27 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.205 -5.340 0.251 12.415 hybrid contribution -0.198 -1.597 -0.278 1.633 sum -11.403 -6.937 -0.027 13.347 Atomic orbital electron populations 1.20576 0.79756 1.06313 1.05830 1.25421 0.98383 0.82471 0.94623 1.70308 1.01712 1.31389 1.27229 1.26416 0.94629 0.91270 0.95365 1.16921 0.84897 0.85210 0.89994 1.21506 1.00496 0.99105 0.95358 1.59169 1.45267 1.24329 1.03396 1.21040 0.90731 0.92465 1.53772 0.93249 1.25500 1.00937 0.95600 0.94048 1.70134 1.24846 1.07813 1.47505 0.85835 0.79902 0.78683 0.78255 1.20470 1.20602 1.20373 1.78095 0.97292 1.13766 1.27719 1.48062 1.04011 1.10610 1.58355 0.70338 0.87455 0.86968 0.88319 0.90415 0.95346 0.96207 0.87174 0.87264 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.51 71.23 0.75 -0.29 15 2 C 0.27 8.27 8.24 138.23 1.14 9.41 15 3 N -0.58 -23.68 11.19 -179.73 -2.01 -25.69 15 4 C 0.21 10.01 6.63 138.63 0.92 10.92 15 5 C 0.32 17.08 0.79 2.03 0.00 17.08 15 6 C -0.11 -5.49 8.50 71.98 0.61 -4.88 15 7 N -0.80 -39.97 8.16 -157.52 -1.29 -41.25 15 8 C -0.54 -31.17 8.06 25.60 0.21 -30.97 15 9 H 0.05 2.94 6.90 -2.91 -0.02 2.92 15 10 C 0.04 2.44 5.23 84.66 0.44 2.88 15 11 N -0.87 -50.08 10.81 21.45 0.23 -49.85 15 12 Si 0.95 45.19 29.54 68.60 2.03 47.21 15 13 H -0.28 -13.22 7.11 99.48 0.71 -12.51 15 14 H -0.28 -12.93 7.11 99.48 0.71 -12.23 15 15 H -0.28 -13.12 7.11 99.48 0.71 -12.42 15 16 N -0.34 -15.60 11.53 -51.34 -0.59 -16.20 15 17 N -0.49 -15.78 7.45 -50.71 -0.38 -16.16 15 18 H 0.45 10.00 8.96 -213.10 -1.91 8.09 15 19 H 0.11 1.31 8.14 -2.38 -0.02 1.29 15 20 H 0.11 1.01 8.14 -2.39 -0.02 0.99 15 21 H 0.10 1.54 8.14 -2.39 -0.02 1.52 15 22 H 0.08 4.36 6.08 -2.39 -0.01 4.35 15 23 H 0.03 1.35 8.14 -2.39 -0.02 1.33 15 24 H 0.02 1.00 8.14 -2.39 -0.02 0.98 15 25 H 0.32 15.74 8.98 -89.69 -0.81 14.94 15 26 H 0.32 14.66 8.98 -89.69 -0.81 13.85 15 27 H 0.26 14.15 8.31 -92.70 -0.77 13.37 15 Total: -1.00 -71.07 236.88 -0.24 -71.31 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: -2.30 Total: 26.47 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 4.07 Total: 4.15 kcal Atomic # 7 Polarization: -145.11 SS G_CDS: -4.03 Total: -149.15 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -71.07 -0.24 -71.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330408.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.651 kcal (2) G-P(sol) polarization free energy of solvation -71.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds