Wall clock time and date at job start Mon Mar 30 2020 02:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99807 * 2 1 4 4 H 1.48498 * 109.47021 * 269.99771 * 3 2 1 5 5 H 1.48506 * 109.47117 * 29.99891 * 3 2 1 6 6 H 1.48497 * 109.46892 * 149.99762 * 3 2 1 7 7 C 1.37875 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00166 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99933 * 359.97438 * 7 2 1 10 10 O 1.42895 * 109.47241 * 300.00355 * 9 7 2 11 11 C 1.53002 * 109.46796 * 60.00317 * 9 7 2 12 12 C 1.52996 * 109.46891 * 120.00058 * 11 9 7 13 13 C 1.53000 * 109.47328 * 299.99597 * 12 11 9 14 14 C 1.52997 * 109.47060 * 60.00126 * 13 12 11 15 15 C 1.53002 * 109.47075 * 180.02562 * 9 7 2 16 16 C 1.52998 * 109.46888 * 180.02562 * 15 9 7 17 17 C 1.52997 * 109.47498 * 59.99810 * 16 15 9 18 18 H 0.96998 * 119.99849 * 0.02562 * 1 2 3 19 19 H 0.96703 * 114.00338 * 60.00036 * 10 9 7 20 20 H 1.08992 * 109.47056 * 359.97438 * 11 9 7 21 21 H 1.09004 * 109.47006 * 239.99828 * 11 9 7 22 22 H 1.09004 * 109.47368 * 179.97438 * 12 11 9 23 23 H 1.09002 * 109.47398 * 180.02562 * 13 12 11 24 24 H 1.09001 * 109.47194 * 300.00476 * 13 12 11 25 25 H 1.09000 * 109.47508 * 119.99984 * 14 13 12 26 26 H 1.08998 * 109.47420 * 240.00733 * 14 13 12 27 27 H 1.09000 * 109.47283 * 60.00156 * 15 9 7 28 28 H 1.08998 * 109.47174 * 299.99747 * 16 15 9 29 29 H 1.09000 * 109.46837 * 180.02562 * 16 15 9 30 30 H 1.08993 * 109.47194 * 239.99494 * 17 16 15 31 31 H 1.09002 * 109.46695 * 119.99508 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 0.4299 -2.5740 1.1688 11 6 0.3710 -2.5810 -1.2472 12 6 0.7786 -3.7985 -2.0793 13 6 2.2445 -3.6637 -2.4964 14 6 3.1245 -3.5818 -1.2475 15 6 2.2453 -3.6621 0.0027 16 6 1.4803 -4.9870 0.0033 17 6 0.6011 -5.0689 -1.2461 18 1 -0.4850 0.8400 -0.0004 19 1 -0.2255 -1.8661 1.2347 20 1 0.4978 -1.6758 -1.8409 21 1 -0.6733 -2.6770 -0.9501 22 1 0.1514 -3.8571 -2.9689 23 1 2.5347 -4.5309 -3.0896 24 1 2.3715 -2.7586 -3.0903 25 1 3.8329 -4.4103 -1.2471 26 1 3.6695 -2.6378 -1.2482 27 1 2.8720 -3.6036 0.8927 28 1 0.8534 -5.0443 0.8931 29 1 2.1886 -5.8155 0.0045 30 1 -0.4434 -5.1650 -0.9497 31 1 0.8919 -5.9362 -1.8388 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000143206025.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:01 Heat of formation + Delta-G solvation = -77.163746 kcal Electronic energy + Delta-G solvation = -13571.994614 eV Core-core repulsion = 11430.891963 eV Total energy + Delta-G solvation = -2141.102650 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.50156 -34.67262 -32.05401 -30.45769 -30.02672 -28.30818 -24.83144 -21.76179 -21.27253 -20.34851 -16.89827 -15.92606 -15.52595 -15.26263 -14.35586 -13.98322 -13.44792 -12.26535 -12.07411 -11.66695 -11.42843 -11.31674 -11.15958 -11.02564 -10.91672 -10.89243 -10.54315 -10.22434 -9.98323 -9.57577 -9.34183 -9.01406 -8.54553 -8.43052 -7.83814 -6.08930 -4.16354 3.26658 3.34050 3.37813 4.38326 5.17259 5.45484 5.51054 5.56839 5.99735 6.00637 6.19291 6.22224 6.29201 6.34807 6.40804 6.63245 6.63595 6.67204 6.84710 6.87578 6.94404 7.12601 7.23500 7.27519 7.47858 7.71534 7.81581 7.97646 8.34446 8.86289 9.50883 9.68281 10.96676 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.048195 B = 0.014635 C = 0.013768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.837200 B = 1912.772647 C = 2033.272052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.258 3.742 10 O -0.595 6.595 11 C -0.106 4.106 12 C -0.091 4.091 13 C -0.103 4.103 14 C -0.102 4.102 15 C -0.066 4.066 16 C -0.108 4.108 17 C -0.106 4.106 18 H 0.264 0.736 19 H 0.378 0.622 20 H 0.066 0.934 21 H 0.044 0.956 22 H 0.049 0.951 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.886 -5.645 -3.151 6.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.077 0.923 9 C 0.218 3.782 10 O -0.404 6.404 11 C -0.144 4.144 12 C -0.109 4.109 13 C -0.141 4.141 14 C -0.140 4.140 15 C -0.085 4.085 16 C -0.146 4.146 17 C -0.144 4.144 18 H 0.074 0.926 19 H 0.228 0.772 20 H 0.085 0.915 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.105 -6.052 -3.037 7.091 hybrid contribution 0.055 1.528 -0.202 1.543 sum 2.160 -4.524 -3.238 5.968 Atomic orbital electron populations 1.69692 1.05830 1.27060 1.51386 1.24985 0.94929 0.99178 0.94384 0.86570 0.79955 0.83271 0.78043 1.20708 1.21218 1.19905 1.21829 0.93568 0.91099 1.50146 0.92287 1.18518 0.86593 0.91010 0.82030 1.86086 1.52811 1.54934 1.46606 1.22135 0.98611 0.95226 0.98470 1.21147 0.95785 0.96473 0.97529 1.21423 0.95393 0.99999 0.97280 1.21419 0.97098 1.00853 0.94580 1.20879 0.96518 0.94372 0.96732 1.21453 0.98151 0.97035 0.97928 1.21462 0.99368 0.96833 0.96693 0.92575 0.77176 0.91527 0.93758 0.93217 0.93833 0.92458 0.93887 0.91252 0.92397 0.91917 0.93955 0.92899 0.93674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.47 10.53 55.43 0.58 -23.88 16 2 C 0.07 1.78 4.93 -17.82 -0.09 1.69 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.24 7.33 -34.44 -0.25 -14.50 16 8 H 0.06 1.59 6.71 -52.48 -0.35 1.24 16 9 C 0.26 6.44 0.55 -91.77 -0.05 6.39 16 10 O -0.60 -15.85 12.14 -35.23 -0.43 -16.27 16 11 C -0.11 -2.52 4.21 -26.73 -0.11 -2.63 16 12 C -0.09 -1.79 3.19 -90.64 -0.29 -2.08 16 13 C -0.10 -1.92 5.71 -26.73 -0.15 -2.08 16 14 C -0.10 -1.99 5.46 -26.70 -0.15 -2.14 16 15 C -0.07 -1.46 2.43 -90.59 -0.22 -1.68 16 16 C -0.11 -2.10 5.56 -26.73 -0.15 -2.25 16 17 C -0.11 -1.94 5.70 -26.75 -0.15 -2.10 16 18 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 19 H 0.38 10.29 7.15 45.56 0.33 10.62 16 20 H 0.07 1.73 6.93 -51.93 -0.36 1.37 16 21 H 0.04 1.09 7.90 -51.93 -0.41 0.68 16 22 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.43 6.62 -51.93 -0.34 1.09 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.06 1.28 7.68 -51.93 -0.40 0.88 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 235.04 15.07 3.54 3.54 Total: -1.00 -27.30 235.04 -6.99 -34.29 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -4.06 Total: 7.70 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -1.61 Total: -21.37 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: 0.58 Total: -23.88 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.43 Total: -16.27 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -27.30 -6.99 -34.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143206025.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.873 kcal (2) G-P(sol) polarization free energy of solvation -27.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds