Wall clock time and date at job start Mon Mar 30 2020 01:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 N 1.31066 * 126.66316 * 269.68592 * 3 2 1 5 5 N 1.28842 * 107.99355 * 179.89614 * 4 3 2 6 6 N 1.28740 * 109.39098 * 0.37634 * 5 4 3 7 7 N 1.29018 * 108.81268 * 359.76740 * 6 5 4 8 8 C 1.46500 * 126.43922 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47032 * 270.02752 * 8 7 6 10 10 C 1.50706 * 109.46882 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00069 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99723 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99911 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99848 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46897 * 90.00112 * 14 12 10 16 16 H 1.48498 * 109.47483 * 210.00428 * 14 12 10 17 17 H 1.48500 * 109.47303 * 330.00387 * 14 12 10 18 18 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 20 20 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 21 21 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 22 22 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 23 23 H 1.09005 * 109.46885 * 30.02263 * 8 7 6 24 24 H 1.08999 * 109.47239 * 150.02475 * 8 7 6 25 25 H 1.09000 * 109.46446 * 299.99354 * 9 8 7 26 26 H 1.08999 * 109.47335 * 59.99782 * 9 8 7 27 27 H 0.97007 * 119.99557 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2987 2.1568 -1.0513 5 7 2.7013 3.3091 -0.6389 6 7 2.7062 3.3246 0.6484 7 7 2.3002 2.1785 1.0798 8 6 2.1580 1.7769 2.4815 9 6 3.4684 1.1560 2.9696 10 6 3.3219 0.7424 4.4113 11 1 2.3878 0.9064 4.9279 12 6 4.3805 0.1546 5.0709 13 7 5.5182 -0.0446 4.4419 14 14 4.1991 -0.3574 6.8581 15 1 3.7036 -1.7558 6.9245 16 1 5.5176 -0.2667 7.5353 17 1 3.2318 0.5431 7.5353 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5140 -0.8900 21 1 1.8933 -0.5137 -0.8901 22 1 1.8933 -0.5138 0.8900 23 1 1.9223 2.6516 3.0878 24 1 1.3543 1.0460 2.5703 25 1 3.7040 0.2814 2.3632 26 1 4.2721 1.8870 2.8808 27 1 6.2630 -0.4578 4.9061 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213340315.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:09 Heat of formation + Delta-G solvation = 90.942209 kcal Electronic energy + Delta-G solvation = -12162.670210 eV Core-core repulsion = 9957.609588 eV Total energy + Delta-G solvation = -2205.060621 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.65594 -35.88746 -34.36306 -33.23378 -30.87541 -29.93545 -25.93042 -24.41425 -23.10153 -21.82362 -20.73477 -17.24962 -16.43579 -15.98646 -15.01426 -14.69370 -14.59608 -13.57325 -12.92186 -12.67627 -12.50184 -12.07387 -11.88799 -11.59532 -11.18702 -11.08012 -11.07245 -10.69697 -10.53603 -10.38807 -9.83113 -9.56343 -9.41110 -8.63829 -6.27581 -4.35220 1.77741 2.62060 2.67740 3.17295 3.25096 3.27183 4.23091 4.31808 4.70651 5.08063 5.12265 5.18031 5.38999 5.53792 5.72641 5.81457 5.92584 5.98806 6.07867 6.15538 6.26958 6.67931 7.21875 7.29379 7.65423 7.96378 8.69528 9.10687 9.31604 10.83444 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.048769 B = 0.008894 C = 0.008186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.997472 B = 3147.517965 C = 3419.587607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 C 0.179 3.821 4 N -0.318 5.318 5 N -0.098 5.098 6 N -0.097 5.097 7 N -0.286 5.286 8 C 0.109 3.891 9 C 0.014 3.986 10 C -0.533 4.533 11 H 0.063 0.937 12 C 0.064 3.936 13 N -0.887 5.887 14 Si 0.902 3.098 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.271 1.271 18 H 0.072 0.928 19 H 0.056 0.944 20 H 0.061 0.939 21 H 0.101 0.899 22 H 0.099 0.901 23 H 0.101 0.899 24 H 0.100 0.900 25 H 0.026 0.974 26 H 0.031 0.969 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.671 -2.008 -3.847 9.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.099 4.099 4 N -0.169 5.169 5 N -0.091 5.091 6 N -0.083 5.083 7 N -0.088 5.088 8 C -0.010 4.010 9 C -0.025 4.025 10 C -0.572 4.572 11 H 0.081 0.919 12 C -0.140 4.140 13 N -0.524 5.524 14 Si 0.729 3.271 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.196 1.196 18 H 0.091 0.909 19 H 0.075 0.925 20 H 0.080 0.920 21 H 0.120 0.880 22 H 0.117 0.883 23 H 0.119 0.881 24 H 0.118 0.882 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.055 -0.857 -4.463 9.248 hybrid contribution -0.111 -1.006 1.614 1.905 sum -8.166 -1.863 -2.849 8.847 Atomic orbital electron populations 1.21744 0.93402 1.02824 1.02510 1.20160 0.96696 0.85825 1.05762 1.25953 1.01970 0.99035 0.82941 1.74844 1.17443 0.99598 1.24989 1.78479 1.15952 1.13455 1.01205 1.78803 1.16453 1.05284 1.07778 1.49001 1.39872 1.08446 1.11455 1.22896 1.04235 1.01796 0.72117 1.19493 0.89426 0.96439 0.97108 1.20886 0.99401 1.41590 0.95284 0.91863 1.25005 0.94968 0.95252 0.98753 1.69966 1.02925 1.42316 1.37201 0.86439 0.77727 0.79025 0.83947 1.20370 1.20990 1.19605 0.90909 0.92496 0.92003 0.88022 0.88277 0.88078 0.88228 0.95530 0.95112 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.89 37.16 0.37 -1.15 15 2 C -0.04 -0.57 6.08 -27.88 -0.17 -0.74 15 3 C 0.18 3.12 7.39 -155.43 -1.15 1.98 15 4 N -0.32 -6.22 12.36 32.70 0.40 -5.81 15 5 N -0.10 -2.06 13.43 60.35 0.81 -1.25 15 6 N -0.10 -2.04 13.29 60.35 0.80 -1.24 15 7 N -0.29 -5.44 3.35 -58.26 -0.19 -5.63 15 8 C 0.11 1.99 6.00 -4.04 -0.02 1.96 15 9 C 0.01 0.32 5.30 -27.88 -0.15 0.17 15 10 C -0.53 -13.45 9.11 -34.44 -0.31 -13.76 15 11 H 0.06 1.49 7.74 -52.49 -0.41 1.09 15 12 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 13 N -0.89 -25.06 13.29 55.43 0.74 -24.32 15 14 Si 0.90 19.99 29.54 -169.99 -5.02 14.96 15 15 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 18 H 0.07 0.60 8.14 -51.93 -0.42 0.17 15 19 H 0.06 0.60 8.14 -51.93 -0.42 0.18 15 20 H 0.06 0.65 8.14 -51.92 -0.42 0.23 15 21 H 0.10 1.16 8.14 -51.93 -0.42 0.74 15 22 H 0.10 1.28 7.81 -51.93 -0.41 0.87 15 23 H 0.10 1.77 8.14 -51.93 -0.42 1.35 15 24 H 0.10 1.53 7.75 -51.93 -0.40 1.13 15 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 26 H 0.03 0.81 8.14 -51.93 -0.42 0.39 15 27 H 0.27 7.10 8.31 -40.82 -0.34 6.76 15 LS Contribution 244.39 15.07 3.68 3.68 Total: -1.00 -29.86 244.39 -3.62 -33.48 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: -3.31 Total: -3.92 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -1.53 Total: -9.95 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 2.56 Total: -38.25 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.86 -3.62 -33.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213340315.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.423 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds