Wall clock time and date at job start Mon Mar 30 2020 01:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 N 1.31066 * 126.66316 * 269.68592 * 3 2 1 5 5 N 1.28842 * 107.99355 * 179.89614 * 4 3 2 6 6 N 1.28740 * 109.39098 * 0.37634 * 5 4 3 7 7 N 1.29018 * 108.81268 * 359.76740 * 6 5 4 8 8 C 1.46500 * 126.43922 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47032 * 270.02752 * 8 7 6 10 10 C 1.50706 * 109.46882 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00069 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99723 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99911 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99848 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46897 * 90.00112 * 14 12 10 16 16 H 1.48498 * 109.47483 * 210.00428 * 14 12 10 17 17 H 1.48500 * 109.47303 * 330.00387 * 14 12 10 18 18 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 20 20 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 21 21 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 22 22 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 23 23 H 1.09005 * 109.46885 * 30.02263 * 8 7 6 24 24 H 1.08999 * 109.47239 * 150.02475 * 8 7 6 25 25 H 1.09000 * 109.46446 * 299.99354 * 9 8 7 26 26 H 1.08999 * 109.47335 * 59.99782 * 9 8 7 27 27 H 0.97007 * 119.99557 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2987 2.1568 -1.0513 5 7 2.7013 3.3091 -0.6389 6 7 2.7062 3.3246 0.6484 7 7 2.3002 2.1785 1.0798 8 6 2.1580 1.7769 2.4815 9 6 3.4684 1.1560 2.9696 10 6 3.3219 0.7424 4.4113 11 1 2.3878 0.9064 4.9279 12 6 4.3805 0.1546 5.0709 13 7 5.5182 -0.0446 4.4419 14 14 4.1991 -0.3574 6.8581 15 1 3.7036 -1.7558 6.9245 16 1 5.5176 -0.2667 7.5353 17 1 3.2318 0.5431 7.5353 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5140 -0.8900 21 1 1.8933 -0.5137 -0.8901 22 1 1.8933 -0.5138 0.8900 23 1 1.9223 2.6516 3.0878 24 1 1.3543 1.0460 2.5703 25 1 3.7040 0.2814 2.3632 26 1 4.2721 1.8870 2.8808 27 1 6.2630 -0.4578 4.9061 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213340315.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:09 Heat of formation + Delta-G solvation = 71.563330 kcal Electronic energy + Delta-G solvation = -12163.510541 eV Core-core repulsion = 9957.609588 eV Total energy + Delta-G solvation = -2205.900953 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.16969 -37.45759 -35.58153 -35.11478 -32.45083 -31.45283 -27.68122 -25.62156 -24.78876 -23.36229 -22.18286 -18.99958 -17.95693 -17.71636 -16.52448 -16.24131 -15.92614 -14.89974 -14.52637 -14.09492 -13.83097 -13.72980 -13.33395 -12.94004 -12.82399 -12.62967 -12.26181 -12.21646 -12.16635 -11.93015 -11.52480 -11.42707 -10.93887 -10.63741 -8.27524 -6.41446 0.28659 1.14329 1.18524 1.45319 1.46917 1.57196 2.39905 3.06880 3.09126 3.34935 3.88318 4.17683 4.25731 4.30182 4.35571 4.46196 4.65436 4.73367 5.00029 5.05381 5.14707 5.33254 5.34660 5.38203 5.69390 6.00090 6.73983 7.30609 7.57015 8.84861 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.048769 B = 0.008894 C = 0.008186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.997472 B = 3147.517965 C = 3419.587607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.046 4.046 3 C 0.191 3.809 4 N -0.335 5.335 5 N -0.114 5.114 6 N -0.120 5.120 7 N -0.293 5.293 8 C 0.121 3.879 9 C 0.021 3.979 10 C -0.540 4.540 11 H 0.083 0.917 12 C 0.005 3.995 13 N -0.933 5.933 14 Si 0.972 3.028 15 H -0.268 1.268 16 H -0.291 1.291 17 H -0.258 1.258 18 H 0.101 0.899 19 H 0.057 0.943 20 H 0.058 0.942 21 H 0.118 0.882 22 H 0.102 0.898 23 H 0.111 0.889 24 H 0.138 0.862 25 H 0.008 0.992 26 H -0.012 1.012 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.566 -3.073 -3.011 11.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 C -0.087 4.087 4 N -0.186 5.186 5 N -0.107 5.107 6 N -0.106 5.106 7 N -0.095 5.095 8 C 0.002 3.998 9 C -0.017 4.017 10 C -0.578 4.578 11 H 0.101 0.899 12 C -0.194 4.194 13 N -0.572 5.572 14 Si 0.796 3.204 15 H -0.193 1.193 16 H -0.217 1.217 17 H -0.181 1.181 18 H 0.119 0.881 19 H 0.076 0.924 20 H 0.077 0.923 21 H 0.136 0.864 22 H 0.120 0.880 23 H 0.129 0.871 24 H 0.155 0.845 25 H 0.027 0.973 26 H 0.006 0.994 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.976 -1.914 -3.633 10.788 hybrid contribution 0.486 -0.693 1.290 1.543 sum -9.490 -2.607 -2.343 10.116 Atomic orbital electron populations 1.21749 0.91006 1.04695 1.02427 1.20492 0.98567 0.82830 1.06694 1.26839 0.99808 1.00152 0.81863 1.74809 1.18312 0.99570 1.25880 1.78444 1.16472 1.14429 1.01395 1.78760 1.17397 1.06608 1.07878 1.49026 1.40202 1.08314 1.11930 1.22758 1.02283 1.02817 0.71909 1.19269 0.90867 0.94796 0.96789 1.21385 0.99951 1.40349 0.96100 0.89873 1.25979 0.94642 0.95459 1.03334 1.70116 1.03994 1.43929 1.39203 0.85337 0.77494 0.79161 0.78421 1.19321 1.21715 1.18144 0.88058 0.92436 0.92264 0.86406 0.87997 0.87100 0.84455 0.97337 0.99396 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.89 71.98 0.71 -1.73 15 2 C -0.05 -1.06 6.08 29.85 0.18 -0.87 15 3 C 0.19 6.41 7.39 138.14 1.02 7.43 15 4 N -0.33 -12.89 12.36 -50.45 -0.62 -13.52 15 5 N -0.11 -4.82 13.43 37.01 0.50 -4.32 15 6 N -0.12 -5.04 13.29 37.02 0.49 -4.55 15 7 N -0.29 -10.89 3.35 -338.25 -1.13 -12.02 15 8 C 0.12 4.23 6.00 86.38 0.52 4.75 15 9 C 0.02 0.99 5.30 29.85 0.16 1.15 15 10 C -0.54 -26.62 9.11 25.60 0.23 -26.38 15 11 H 0.08 3.69 7.74 -2.91 -0.02 3.67 15 12 C 0.00 0.25 5.46 84.65 0.46 0.71 15 13 N -0.93 -53.50 13.29 21.45 0.28 -53.22 15 14 Si 0.97 40.19 29.54 68.60 2.03 42.21 15 15 H -0.27 -10.59 7.11 99.48 0.71 -9.88 15 16 H -0.29 -12.26 7.11 99.48 0.71 -11.56 15 17 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 18 H 0.10 1.23 8.14 -2.39 -0.02 1.21 15 19 H 0.06 1.00 8.14 -2.39 -0.02 0.98 15 20 H 0.06 1.08 8.14 -2.38 -0.02 1.06 15 21 H 0.12 2.38 8.14 -2.39 -0.02 2.36 15 22 H 0.10 2.36 7.81 -2.39 -0.02 2.34 15 23 H 0.11 3.67 8.14 -2.38 -0.02 3.65 15 24 H 0.14 3.76 7.75 -2.39 -0.02 3.74 15 25 H 0.01 0.41 8.14 -2.39 -0.02 0.40 15 26 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 15 27 H 0.27 14.40 8.31 -92.70 -0.77 13.63 15 Total: -1.00 -64.72 244.39 5.99 -58.73 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: 1.15 Total: 1.62 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: 3.29 Total: -14.94 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -0.48 Total: -87.62 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.21 kcal Total: -64.72 5.99 -58.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213340315.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.295 kcal (2) G-P(sol) polarization free energy of solvation -64.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds