Wall clock time and date at job start Mon Mar 30 2020 02:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99920 * 2 1 4 4 H 1.48493 * 109.47515 * 270.00617 * 3 2 1 5 5 H 1.48499 * 109.47067 * 30.00769 * 3 2 1 6 6 H 1.48503 * 109.47103 * 150.00474 * 3 2 1 7 7 C 1.37877 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00358 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99896 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.30574 * 299.28425 * 9 7 2 11 11 C 1.54532 * 110.34329 * 176.98968 * 9 7 2 12 12 C 1.54695 * 104.05796 * 217.43139 * 11 9 7 13 13 C 1.53648 * 103.81618 * 0.58301 * 12 11 9 14 14 C 1.53462 * 110.68456 * 143.24309 * 13 12 11 15 15 C 1.55069 * 104.00239 * 98.21092 * 14 13 12 16 16 C 1.54973 * 102.85880 * 37.20846 * 15 14 13 17 17 C 1.53072 * 110.89771 * 262.40527 * 13 12 11 18 18 O 1.43460 * 105.91961 * 23.01623 * 13 12 11 19 19 H 0.96998 * 120.00303 * 359.97438 * 1 2 3 20 20 H 1.09004 * 110.51664 * 336.07326 * 11 9 7 21 21 H 1.09000 * 110.51467 * 98.78891 * 11 9 7 22 22 H 1.08994 * 110.55671 * 119.16875 * 12 11 9 23 23 H 1.09001 * 110.55588 * 241.86262 * 12 11 9 24 24 H 1.09001 * 110.52259 * 216.84366 * 14 13 12 25 25 H 1.08996 * 110.52202 * 339.57913 * 14 13 12 26 26 H 1.09003 * 110.73584 * 278.86808 * 15 14 13 27 27 H 1.08997 * 110.74079 * 155.55037 * 15 14 13 28 28 H 1.09004 * 110.48005 * 203.81443 * 16 15 14 29 29 H 1.09001 * 110.47982 * 81.17840 * 16 15 14 30 30 H 1.08993 * 110.08985 * 357.80441 * 17 13 12 31 31 H 1.09000 * 110.08842 * 119.39964 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6293 -2.5770 0.8913 11 6 2.2356 -3.6878 -0.0773 12 6 1.5163 -4.7135 -0.9848 13 6 0.1987 -4.0152 -1.3551 14 6 -0.1971 -4.3369 -2.8025 15 6 -1.2326 -5.4826 -2.6625 16 6 -2.0175 -5.0843 -1.3869 17 6 -0.9426 -4.4881 -0.4512 18 8 0.4383 -2.6103 -1.1912 19 1 -0.4850 0.8400 0.0004 20 1 3.1780 -3.3749 -0.5269 21 1 2.4052 -4.1080 0.9141 22 1 2.1072 -4.9145 -1.8783 23 1 1.3223 -5.6372 -0.4395 24 1 -0.6515 -3.4669 -3.2767 25 1 0.6705 -4.6731 -3.3701 26 1 -0.7317 -6.4408 -2.5239 27 1 -1.8938 -5.5133 -3.5285 28 1 -2.4755 -5.9622 -0.9312 29 1 -2.7749 -4.3368 -1.6230 30 1 -0.5821 -5.2507 0.2390 31 1 -1.3548 -3.6450 0.1033 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229313984.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:06 Heat of formation + Delta-G solvation = -65.186798 kcal Electronic energy + Delta-G solvation = -13029.528376 eV Core-core repulsion = 10888.945085 eV Total energy + Delta-G solvation = -2140.583291 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.17930 -35.35302 -32.38137 -30.79935 -28.58060 -28.07239 -25.30312 -22.67208 -20.65134 -19.68848 -18.63392 -16.52149 -15.25348 -15.12781 -14.46003 -14.21566 -13.63362 -12.90196 -12.58299 -12.18915 -11.84648 -11.38700 -11.16479 -10.87064 -10.69881 -10.60951 -10.52979 -10.31236 -10.19124 -9.86928 -9.63727 -9.51263 -9.03657 -8.54681 -7.96198 -5.97260 -4.09413 3.33412 3.39458 3.42136 4.45231 4.93260 5.13193 5.17658 5.34682 5.64406 5.76062 5.80002 5.83204 5.97715 6.04778 6.15613 6.28541 6.32672 6.36817 6.50153 6.62381 6.66463 6.75140 6.79913 6.91294 6.92304 7.09188 7.58990 7.92654 8.29193 8.64604 9.03972 9.60569 11.10623 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.055651 B = 0.010813 C = 0.010045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.015588 B = 2588.822643 C = 2786.735563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.076 3.924 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.063 0.937 9 C 0.206 3.794 10 H 0.024 0.976 11 C -0.148 4.148 12 C -0.141 4.141 13 C 0.090 3.910 14 C -0.110 4.110 15 C -0.123 4.123 16 C -0.120 4.120 17 C -0.137 4.137 18 O -0.339 6.339 19 H 0.260 0.740 20 H 0.062 0.938 21 H 0.052 0.948 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.243 -9.102 -2.537 9.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.081 0.919 9 C 0.151 3.849 10 H 0.042 0.958 11 C -0.186 4.186 12 C -0.179 4.179 13 C 0.048 3.952 14 C -0.148 4.148 15 C -0.160 4.160 16 C -0.158 4.158 17 C -0.175 4.175 18 O -0.258 6.258 19 H 0.070 0.930 20 H 0.081 0.919 21 H 0.070 0.930 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.479 -8.808 -2.656 9.318 hybrid contribution 0.519 0.718 0.144 0.898 sum -0.960 -8.090 -2.513 8.525 Atomic orbital electron populations 1.70040 1.05993 1.26466 1.47522 1.25077 0.94789 0.99241 0.93810 0.86627 0.79926 0.83389 0.78218 1.20501 1.21137 1.19774 1.21073 0.92640 0.89964 1.53197 0.91919 1.20523 0.86807 0.92324 0.85244 0.95801 1.23089 1.00633 0.97008 0.97839 1.22967 0.97118 0.98180 0.99590 1.22137 0.92922 0.86541 0.93566 1.22281 0.98343 0.98051 0.96115 1.22491 0.97698 0.98180 0.97653 1.22348 0.97904 0.99667 0.95885 1.22593 0.96355 1.00546 0.98012 1.89409 1.71921 1.17217 1.47222 0.92999 0.91918 0.92963 0.92161 0.92365 0.90831 0.91909 0.92008 0.92095 0.92531 0.91764 0.92454 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.17 12.94 55.43 0.72 -25.45 16 2 C 0.08 2.22 5.42 -17.82 -0.10 2.12 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -15.35 8.78 -34.44 -0.30 -15.65 16 8 H 0.06 1.75 7.59 -52.49 -0.40 1.36 16 9 C 0.21 5.50 2.82 -27.08 -0.08 5.42 16 10 H 0.02 0.69 8.00 -51.93 -0.42 0.27 16 11 C -0.15 -3.22 6.63 -25.03 -0.17 -3.39 16 12 C -0.14 -2.67 6.17 -25.50 -0.16 -2.83 16 13 C 0.09 1.86 1.04 -90.01 -0.09 1.76 16 14 C -0.11 -1.97 6.16 -25.40 -0.16 -2.12 16 15 C -0.12 -1.78 6.92 -24.60 -0.17 -1.95 16 16 C -0.12 -1.87 6.85 -24.91 -0.17 -2.04 16 17 C -0.14 -2.58 5.86 -25.92 -0.15 -2.73 16 18 O -0.34 -9.07 10.21 -35.23 -0.36 -9.43 16 19 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 20 H 0.06 1.37 7.72 -51.93 -0.40 0.97 16 21 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 22 H 0.06 1.07 7.42 -51.93 -0.39 0.68 16 23 H 0.06 0.97 7.39 -51.93 -0.38 0.59 16 24 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 25 H 0.06 1.03 7.39 -51.93 -0.38 0.65 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.98 7.27 -51.93 -0.38 0.61 16 31 H 0.08 1.65 7.91 -51.93 -0.41 1.24 16 LS Contribution 248.45 15.07 3.74 3.74 Total: -1.00 -30.73 248.45 -7.29 -38.02 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -4.83 Total: -2.22 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -1.54 Total: -21.42 kcal Atomic # 7 Polarization: -26.17 SS G_CDS: 0.72 Total: -25.45 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.36 Total: -9.43 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.73 -7.29 -38.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229313984.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.168 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds