Wall clock time and date at job start Mon Mar 30 2020 02:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99920 * 2 1 4 4 H 1.48493 * 109.47515 * 270.00617 * 3 2 1 5 5 H 1.48499 * 109.47067 * 30.00769 * 3 2 1 6 6 H 1.48503 * 109.47103 * 150.00474 * 3 2 1 7 7 C 1.37877 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00358 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99896 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.30574 * 299.28425 * 9 7 2 11 11 C 1.54532 * 110.34329 * 176.98968 * 9 7 2 12 12 C 1.54695 * 104.05796 * 217.43139 * 11 9 7 13 13 C 1.53648 * 103.81618 * 0.58301 * 12 11 9 14 14 C 1.53462 * 110.68456 * 143.24309 * 13 12 11 15 15 C 1.55069 * 104.00239 * 98.21092 * 14 13 12 16 16 C 1.54973 * 102.85880 * 37.20846 * 15 14 13 17 17 C 1.53072 * 110.89771 * 262.40527 * 13 12 11 18 18 O 1.43460 * 105.91961 * 23.01623 * 13 12 11 19 19 H 0.96998 * 120.00303 * 359.97438 * 1 2 3 20 20 H 1.09004 * 110.51664 * 336.07326 * 11 9 7 21 21 H 1.09000 * 110.51467 * 98.78891 * 11 9 7 22 22 H 1.08994 * 110.55671 * 119.16875 * 12 11 9 23 23 H 1.09001 * 110.55588 * 241.86262 * 12 11 9 24 24 H 1.09001 * 110.52259 * 216.84366 * 14 13 12 25 25 H 1.08996 * 110.52202 * 339.57913 * 14 13 12 26 26 H 1.09003 * 110.73584 * 278.86808 * 15 14 13 27 27 H 1.08997 * 110.74079 * 155.55037 * 15 14 13 28 28 H 1.09004 * 110.48005 * 203.81443 * 16 15 14 29 29 H 1.09001 * 110.47982 * 81.17840 * 16 15 14 30 30 H 1.08993 * 110.08985 * 357.80441 * 17 13 12 31 31 H 1.09000 * 110.08842 * 119.39964 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6293 -2.5770 0.8913 11 6 2.2356 -3.6878 -0.0773 12 6 1.5163 -4.7135 -0.9848 13 6 0.1987 -4.0152 -1.3551 14 6 -0.1971 -4.3369 -2.8025 15 6 -1.2326 -5.4826 -2.6625 16 6 -2.0175 -5.0843 -1.3869 17 6 -0.9426 -4.4881 -0.4512 18 8 0.4383 -2.6103 -1.1912 19 1 -0.4850 0.8400 0.0004 20 1 3.1780 -3.3749 -0.5269 21 1 2.4052 -4.1080 0.9141 22 1 2.1072 -4.9145 -1.8783 23 1 1.3223 -5.6372 -0.4395 24 1 -0.6515 -3.4669 -3.2767 25 1 0.6705 -4.6731 -3.3701 26 1 -0.7317 -6.4408 -2.5239 27 1 -1.8938 -5.5133 -3.5285 28 1 -2.4755 -5.9622 -0.9312 29 1 -2.7749 -4.3368 -1.6230 30 1 -0.5821 -5.2507 0.2390 31 1 -1.3548 -3.6450 0.1033 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229313984.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:06 Heat of formation + Delta-G solvation = -84.334233 kcal Electronic energy + Delta-G solvation = -13030.358671 eV Core-core repulsion = 10888.945085 eV Total energy + Delta-G solvation = -2141.413586 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.83135 -36.95762 -34.52085 -32.58688 -30.26438 -29.56744 -27.14589 -24.45730 -22.21786 -21.26743 -20.22938 -18.66670 -16.85784 -16.79944 -16.31851 -15.86826 -15.32909 -14.59884 -14.10661 -13.87989 -13.62483 -13.16612 -12.90496 -12.63201 -12.37050 -12.11457 -11.99037 -11.94448 -11.84225 -11.40109 -11.21349 -11.17096 -10.99938 -10.70975 -9.92802 -8.16984 -6.37750 1.38078 1.40330 1.50821 2.39017 3.05166 3.55068 3.74329 3.78974 4.22740 4.24469 4.28798 4.30819 4.58355 4.66885 4.75104 4.80828 4.90742 4.98943 5.01975 5.10653 5.16967 5.20816 5.23943 5.39353 5.50362 5.51299 5.58668 5.73205 6.16769 6.58701 7.00358 7.37637 8.91540 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.055651 B = 0.010813 C = 0.010045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.015588 B = 2588.822643 C = 2786.735563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.019 3.981 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.557 4.557 8 H 0.065 0.935 9 C 0.200 3.800 10 H -0.012 1.012 11 C -0.143 4.143 12 C -0.130 4.130 13 C 0.069 3.931 14 C -0.112 4.112 15 C -0.108 4.108 16 C -0.117 4.117 17 C -0.137 4.137 18 O -0.380 6.380 19 H 0.261 0.739 20 H 0.059 0.941 21 H 0.068 0.932 22 H 0.077 0.923 23 H 0.089 0.911 24 H 0.048 0.952 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.580 -10.730 -3.257 11.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.182 4.182 3 Si 0.788 3.212 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.594 4.594 8 H 0.083 0.917 9 C 0.144 3.856 10 H 0.006 0.994 11 C -0.181 4.181 12 C -0.167 4.167 13 C 0.029 3.971 14 C -0.150 4.150 15 C -0.146 4.146 16 C -0.154 4.154 17 C -0.175 4.175 18 O -0.300 6.300 19 H 0.070 0.930 20 H 0.078 0.922 21 H 0.087 0.913 22 H 0.095 0.905 23 H 0.108 0.892 24 H 0.066 0.934 25 H 0.097 0.903 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.807 -10.454 -3.376 11.015 hybrid contribution 0.285 1.194 0.385 1.286 sum -0.522 -9.260 -2.992 9.745 Atomic orbital electron populations 1.70194 1.07774 1.27402 1.48749 1.26010 0.95679 1.03259 0.93273 0.85490 0.78896 0.78449 0.78388 1.20086 1.20443 1.18398 1.21539 0.93088 0.91612 1.53168 0.91693 1.20385 0.87261 0.93704 0.84223 0.99404 1.22980 0.99382 0.96063 0.99640 1.22944 0.95648 0.98181 0.99944 1.22636 0.94582 0.83943 0.95967 1.22319 0.99972 0.98638 0.94042 1.22476 0.96806 0.97616 0.97677 1.22353 0.96801 1.00326 0.95952 1.22558 0.96919 0.99584 0.98454 1.89312 1.72364 1.21504 1.46781 0.92991 0.92226 0.91313 0.90475 0.89243 0.93350 0.90314 0.89380 0.89902 0.89418 0.92982 0.90600 0.94871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.83 12.94 21.45 0.28 -56.56 16 2 C 0.02 1.15 5.42 84.65 0.46 1.61 16 3 Si 0.96 45.46 29.54 68.60 2.03 47.48 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.56 -33.01 8.78 25.60 0.22 -32.78 16 8 H 0.06 3.69 7.59 -2.91 -0.02 3.67 16 9 C 0.20 11.00 2.82 30.37 0.09 11.09 16 10 H -0.01 -0.70 8.00 -2.39 -0.02 -0.72 16 11 C -0.14 -6.14 6.63 31.69 0.21 -5.93 16 12 C -0.13 -4.62 6.17 31.39 0.19 -4.43 16 13 C 0.07 2.82 1.04 -10.40 -0.01 2.81 16 14 C -0.11 -3.82 6.16 31.46 0.19 -3.62 16 15 C -0.11 -2.75 6.92 31.98 0.22 -2.53 16 16 C -0.12 -3.37 6.85 31.77 0.22 -3.16 16 17 C -0.14 -5.11 5.86 31.12 0.18 -4.93 16 18 O -0.38 -21.03 10.21 -148.98 -1.52 -22.55 16 19 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 20 H 0.06 2.56 7.72 -2.38 -0.02 2.54 16 21 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 22 H 0.08 2.48 7.42 -2.39 -0.02 2.46 16 23 H 0.09 2.63 7.39 -2.39 -0.02 2.61 16 24 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 25 H 0.08 2.38 7.39 -2.39 -0.02 2.37 16 26 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 2.47 7.27 -2.39 -0.02 2.46 16 31 H 0.03 1.49 7.91 -2.39 -0.02 1.47 16 Total: -1.00 -69.12 248.45 3.84 -65.27 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.08 Total: 8.22 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 1.98 Total: -41.86 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.28 Total: -56.56 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -1.52 Total: -22.55 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -69.12 3.84 -65.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229313984.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.064 kcal (2) G-P(sol) polarization free energy of solvation -69.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds