Wall clock time and date at job start Mon Mar 30 2020 02:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47619 * 2 1 4 4 C 1.53002 * 109.96835 * 297.41461 * 3 2 1 5 5 C 1.50703 * 109.46899 * 305.26171 * 4 3 2 6 6 H 1.07997 * 119.99978 * 355.54402 * 5 4 3 7 7 C 1.37871 * 119.99793 * 175.54367 * 5 4 3 8 8 N 1.31515 * 120.00146 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99991 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47036 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46883 * 239.99899 * 9 7 5 12 12 H 1.48500 * 109.46985 * 119.99948 * 9 7 5 13 13 C 1.54285 * 109.98171 * 58.68171 * 3 2 1 14 14 C 1.54984 * 103.75022 * 142.51436 * 13 3 2 15 15 C 1.54890 * 102.33226 * 322.91580 * 14 13 3 16 16 C 1.51445 * 110.02148 * 176.11862 * 3 2 1 17 17 O 1.20754 * 126.34137 * 60.96878 * 16 3 2 18 18 H 1.09005 * 109.46726 * 59.57296 * 1 2 3 19 19 H 1.08996 * 109.47247 * 179.57319 * 1 2 3 20 20 H 1.08998 * 109.47050 * 299.57310 * 1 2 3 21 21 H 1.09000 * 109.47466 * 240.00008 * 2 1 3 22 22 H 1.09000 * 109.47427 * 119.99833 * 2 1 3 23 23 H 1.08998 * 109.46712 * 185.26882 * 4 3 2 24 24 H 1.08994 * 109.47511 * 65.26677 * 4 3 2 25 25 H 0.96997 * 120.00240 * 0.02562 * 8 7 5 26 26 H 1.09003 * 110.56702 * 261.07831 * 13 3 2 27 27 H 1.09001 * 110.57026 * 23.94508 * 13 3 2 28 28 H 1.09005 * 110.82801 * 81.12623 * 14 13 3 29 29 H 1.08992 * 110.83124 * 204.70273 * 14 13 3 30 30 H 1.09007 * 110.43649 * 156.36306 * 15 14 13 31 31 H 1.08996 * 110.43952 * 278.75748 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5901 2.1558 -1.2765 5 6 2.0346 1.3628 -2.4785 6 1 2.6446 0.4811 -2.3482 7 6 1.6627 1.7629 -3.7443 8 7 0.9204 2.8368 -3.9030 9 14 2.2131 0.7795 -5.2341 10 1 3.0338 -0.3754 -4.7893 11 1 3.0225 1.6464 -6.1279 12 1 1.0211 0.2863 -5.9696 13 6 1.5053 2.1908 1.2387 14 6 2.6899 3.0962 1.6619 15 6 3.9154 2.1939 1.3736 16 6 3.5514 1.4580 0.0963 17 8 4.3239 0.9742 -0.6957 18 1 -0.3633 0.5205 -0.8862 19 1 -0.3633 -1.0276 -0.0077 20 1 -0.3633 0.5072 0.8938 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 2.0346 3.1504 -1.3128 24 1 0.5036 2.2431 -1.2803 25 1 0.6348 3.3477 -3.1295 26 1 0.6367 2.7946 0.9759 27 1 1.2577 1.4874 2.0338 28 1 2.7228 4.0006 1.0544 29 1 2.6303 3.3420 2.7221 30 1 4.8078 2.8012 1.2220 31 1 4.0697 1.4891 2.1906 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238276127.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:10 Heat of formation + Delta-G solvation = -67.755718 kcal Electronic energy + Delta-G solvation = -13062.039155 eV Core-core repulsion = 10921.344467 eV Total energy + Delta-G solvation = -2140.694688 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.63881 -36.21609 -33.63058 -32.22835 -28.54865 -26.80638 -25.35589 -22.88728 -21.84675 -20.00004 -17.76416 -16.56951 -15.34621 -15.06427 -14.35805 -13.98664 -13.59644 -13.26252 -12.71019 -12.50720 -12.03064 -11.87372 -11.32826 -11.25664 -11.05131 -10.74953 -10.67954 -10.52437 -10.44235 -10.03926 -9.89202 -9.51712 -8.57074 -8.30258 -8.15504 -6.25226 -3.92560 2.73898 3.51137 3.54855 3.70571 4.61922 4.71292 4.97155 5.26583 5.29249 5.50196 5.58938 5.72559 5.82371 5.90550 5.94785 6.03185 6.15764 6.18927 6.34353 6.40461 6.50869 6.60954 6.79062 6.98375 7.05630 7.35183 7.42039 8.27601 8.32775 8.64627 9.00234 9.76554 11.14671 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.038248 B = 0.012933 C = 0.012091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.879832 B = 2164.428194 C = 2315.148450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.106 4.106 4 C 0.031 3.969 5 C -0.586 4.586 6 H 0.062 0.938 7 C 0.013 3.987 8 N -0.921 5.921 9 Si 1.070 2.930 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.289 1.289 13 C -0.115 4.115 14 C -0.118 4.118 15 C -0.186 4.186 16 C 0.379 3.621 17 O -0.431 6.431 18 H 0.069 0.931 19 H 0.042 0.958 20 H 0.043 0.957 21 H 0.079 0.921 22 H 0.038 0.962 23 H 0.003 0.997 24 H 0.022 0.978 25 H 0.266 0.734 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.953 -1.907 11.174 11.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.130 4.130 3 C -0.107 4.107 4 C -0.006 4.006 5 C -0.625 4.625 6 H 0.080 0.920 7 C -0.189 4.189 8 N -0.558 5.558 9 Si 0.899 3.101 10 H -0.214 1.214 11 H -0.216 1.216 12 H -0.216 1.216 13 C -0.152 4.152 14 C -0.156 4.156 15 C -0.224 4.224 16 C 0.252 3.748 17 O -0.301 6.301 18 H 0.088 0.912 19 H 0.061 0.939 20 H 0.062 0.938 21 H 0.098 0.902 22 H 0.057 0.943 23 H 0.021 0.979 24 H 0.040 0.960 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.294 -2.253 9.089 9.453 hybrid contribution 0.080 0.233 1.757 1.774 sum 1.374 -2.020 10.845 11.117 Atomic orbital electron populations 1.21722 0.95901 1.00473 1.02006 1.21332 0.96099 0.94445 1.01154 1.21766 0.93734 0.97417 0.97806 1.19206 0.96192 0.94726 0.90456 1.22171 1.34904 1.13435 0.91952 0.92016 1.25740 0.94995 0.97315 1.00883 1.70743 1.34596 1.16374 1.34101 0.83534 0.76009 0.75390 0.75184 1.21425 1.21569 1.21569 1.22468 0.97735 0.98033 0.96966 1.22381 0.94304 0.98090 1.00809 1.22931 0.99888 1.00369 0.99187 1.24780 0.91513 0.74414 0.84049 1.90344 1.58445 1.38276 1.43060 0.91239 0.93856 0.93754 0.90201 0.94280 0.97926 0.96000 0.92349 0.91077 0.91720 0.91044 0.91320 0.90023 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.37 37.16 0.35 -2.16 16 2 C -0.09 -1.78 4.59 -26.73 -0.12 -1.90 16 3 C -0.11 -2.13 0.39 -154.62 -0.06 -2.19 16 4 C 0.03 0.77 2.84 -27.88 -0.08 0.69 16 5 C -0.59 -16.68 7.52 -34.44 -0.26 -16.94 16 6 H 0.06 1.81 5.58 -52.49 -0.29 1.52 16 7 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 8 N -0.92 -28.44 13.65 55.43 0.76 -27.68 16 9 Si 1.07 26.63 29.90 -169.99 -5.08 21.55 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 C -0.11 -1.80 4.83 -25.01 -0.12 -1.92 16 14 C -0.12 -1.66 6.95 -24.69 -0.17 -1.83 16 15 C -0.19 -2.83 6.72 -26.32 -0.18 -3.00 16 16 C 0.38 7.79 6.34 -28.10 -0.18 7.61 16 17 O -0.43 -10.50 16.46 6.00 0.10 -10.40 16 18 H 0.07 1.41 6.64 -51.93 -0.34 1.06 16 19 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 20 H 0.04 0.67 7.00 -51.93 -0.36 0.31 16 21 H 0.08 1.77 6.35 -51.93 -0.33 1.44 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.00 0.07 8.13 -51.93 -0.42 -0.35 16 24 H 0.02 0.56 6.46 -51.93 -0.34 0.23 16 25 H 0.27 8.13 7.20 -40.82 -0.29 7.83 16 26 H 0.07 1.13 7.81 -51.93 -0.41 0.73 16 27 H 0.06 0.89 7.53 -51.93 -0.39 0.50 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 247.88 15.07 3.74 3.74 Total: -1.00 -31.83 247.88 -5.92 -37.75 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -4.51 Total: -3.60 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -0.92 Total: -21.35 kcal Atomic # 7 Polarization: -28.44 SS G_CDS: 0.76 Total: -27.68 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.10 Total: -10.40 kcal Atomic # 14 Polarization: 26.63 SS G_CDS: -5.08 Total: 21.55 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.83 -5.92 -37.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238276127.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.005 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds