Wall clock time and date at job start Mon Mar 30 2020 02:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47619 * 2 1 4 4 C 1.53002 * 109.96835 * 297.41461 * 3 2 1 5 5 C 1.50703 * 109.46899 * 305.26171 * 4 3 2 6 6 H 1.07997 * 119.99978 * 355.54402 * 5 4 3 7 7 C 1.37871 * 119.99793 * 175.54367 * 5 4 3 8 8 N 1.31515 * 120.00146 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99991 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47036 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46883 * 239.99899 * 9 7 5 12 12 H 1.48500 * 109.46985 * 119.99948 * 9 7 5 13 13 C 1.54285 * 109.98171 * 58.68171 * 3 2 1 14 14 C 1.54984 * 103.75022 * 142.51436 * 13 3 2 15 15 C 1.54890 * 102.33226 * 322.91580 * 14 13 3 16 16 C 1.51445 * 110.02148 * 176.11862 * 3 2 1 17 17 O 1.20754 * 126.34137 * 60.96878 * 16 3 2 18 18 H 1.09005 * 109.46726 * 59.57296 * 1 2 3 19 19 H 1.08996 * 109.47247 * 179.57319 * 1 2 3 20 20 H 1.08998 * 109.47050 * 299.57310 * 1 2 3 21 21 H 1.09000 * 109.47466 * 240.00008 * 2 1 3 22 22 H 1.09000 * 109.47427 * 119.99833 * 2 1 3 23 23 H 1.08998 * 109.46712 * 185.26882 * 4 3 2 24 24 H 1.08994 * 109.47511 * 65.26677 * 4 3 2 25 25 H 0.96997 * 120.00240 * 0.02562 * 8 7 5 26 26 H 1.09003 * 110.56702 * 261.07831 * 13 3 2 27 27 H 1.09001 * 110.57026 * 23.94508 * 13 3 2 28 28 H 1.09005 * 110.82801 * 81.12623 * 14 13 3 29 29 H 1.08992 * 110.83124 * 204.70273 * 14 13 3 30 30 H 1.09007 * 110.43649 * 156.36306 * 15 14 13 31 31 H 1.08996 * 110.43952 * 278.75748 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5901 2.1558 -1.2765 5 6 2.0346 1.3628 -2.4785 6 1 2.6446 0.4811 -2.3482 7 6 1.6627 1.7629 -3.7443 8 7 0.9204 2.8368 -3.9030 9 14 2.2131 0.7795 -5.2341 10 1 3.0338 -0.3754 -4.7893 11 1 3.0225 1.6464 -6.1279 12 1 1.0211 0.2863 -5.9696 13 6 1.5053 2.1908 1.2387 14 6 2.6899 3.0962 1.6619 15 6 3.9154 2.1939 1.3736 16 6 3.5514 1.4580 0.0963 17 8 4.3239 0.9742 -0.6957 18 1 -0.3633 0.5205 -0.8862 19 1 -0.3633 -1.0276 -0.0077 20 1 -0.3633 0.5072 0.8938 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 2.0346 3.1504 -1.3128 24 1 0.5036 2.2431 -1.2803 25 1 0.6348 3.3477 -3.1295 26 1 0.6367 2.7946 0.9759 27 1 1.2577 1.4874 2.0338 28 1 2.7228 4.0006 1.0544 29 1 2.6303 3.3420 2.7221 30 1 4.8078 2.8012 1.2220 31 1 4.0697 1.4891 2.1906 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238276127.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:10 Heat of formation + Delta-G solvation = -87.616498 kcal Electronic energy + Delta-G solvation = -13062.900383 eV Core-core repulsion = 10921.344467 eV Total energy + Delta-G solvation = -2141.555916 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.20590 -37.86879 -35.46687 -33.96546 -30.31368 -28.19290 -27.11217 -24.88658 -23.34286 -21.36701 -19.54322 -18.55115 -16.84150 -16.57289 -16.05707 -15.66391 -15.51774 -14.79875 -14.44149 -14.07422 -13.55348 -13.26503 -13.16573 -13.08545 -12.63486 -12.48257 -12.23827 -12.01231 -11.96000 -11.77696 -11.47644 -11.17091 -10.56782 -10.46807 -9.94630 -8.61679 -6.27933 1.14307 1.45691 1.54689 1.72850 2.53902 3.18409 3.31004 3.66759 3.90948 4.06040 4.24403 4.35219 4.36117 4.63827 4.69310 4.75319 4.80049 4.90127 5.01932 5.06716 5.11726 5.18498 5.32024 5.36271 5.44469 5.49757 5.55826 6.09375 6.30055 6.64254 6.78952 7.47449 8.78967 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.038248 B = 0.012933 C = 0.012091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.879832 B = 2164.428194 C = 2315.148450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 C -0.115 4.115 4 C 0.038 3.962 5 C -0.587 4.587 6 H 0.047 0.953 7 C -0.041 4.041 8 N -0.945 5.945 9 Si 1.110 2.890 10 H -0.281 1.281 11 H -0.282 1.282 12 H -0.274 1.274 13 C -0.107 4.107 14 C -0.111 4.111 15 C -0.173 4.173 16 C 0.364 3.636 17 O -0.483 6.483 18 H 0.030 0.970 19 H 0.061 0.939 20 H 0.073 0.927 21 H 0.037 0.963 22 H 0.072 0.928 23 H -0.023 1.023 24 H 0.010 0.990 25 H 0.255 0.745 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.022 -2.338 13.557 13.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 C -0.116 4.116 4 C 0.001 3.999 5 C -0.625 4.625 6 H 0.065 0.935 7 C -0.238 4.238 8 N -0.584 5.584 9 Si 0.933 3.067 10 H -0.206 1.206 11 H -0.208 1.208 12 H -0.199 1.199 13 C -0.145 4.145 14 C -0.149 4.149 15 C -0.211 4.211 16 C 0.241 3.759 17 O -0.358 6.358 18 H 0.049 0.951 19 H 0.080 0.920 20 H 0.092 0.908 21 H 0.056 0.944 22 H 0.091 0.909 23 H -0.005 1.005 24 H 0.028 0.972 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.132 0.868 30 H 0.109 0.891 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.347 -2.672 11.500 11.883 hybrid contribution 0.052 0.356 1.051 1.111 sum 1.399 -2.317 12.552 12.840 Atomic orbital electron populations 1.21655 0.94627 1.01573 1.01533 1.21315 0.97194 0.93788 1.00728 1.21854 0.94373 0.97993 0.97407 1.19035 0.95068 0.93470 0.92350 1.22456 1.33711 1.12942 0.93440 0.93457 1.27081 0.94831 0.97696 1.04174 1.70861 1.36417 1.17514 1.33568 0.83007 0.76391 0.74581 0.72687 1.20631 1.20813 1.19936 1.22452 0.98112 0.98483 0.95418 1.22427 0.92458 0.96720 1.03252 1.22935 1.00739 1.00610 0.96777 1.25609 0.91477 0.73467 0.85378 1.90313 1.59456 1.40587 1.45423 0.95088 0.91963 0.90780 0.94372 0.90895 1.00487 0.97205 0.93523 0.91539 0.88270 0.92572 0.86797 0.89147 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 9.37 71.98 0.67 -3.91 16 2 C -0.09 -3.46 4.59 30.59 0.14 -3.32 16 3 C -0.12 -4.53 0.39 -52.25 -0.02 -4.55 16 4 C 0.04 1.94 2.84 29.85 0.08 2.02 16 5 C -0.59 -34.64 7.52 25.60 0.19 -34.44 16 6 H 0.05 2.89 5.58 -2.91 -0.02 2.88 16 7 C -0.04 -2.50 5.46 84.65 0.46 -2.03 16 8 N -0.94 -60.09 13.65 21.45 0.29 -59.80 16 9 Si 1.11 54.63 29.90 68.60 2.05 56.68 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 13 C -0.11 -3.02 4.83 31.71 0.15 -2.87 16 14 C -0.11 -2.67 6.95 31.92 0.22 -2.45 16 15 C -0.17 -4.65 6.72 30.86 0.21 -4.45 16 16 C 0.36 14.66 6.34 29.70 0.19 14.85 16 17 O -0.48 -24.01 16.46 -1.43 -0.02 -24.03 16 18 H 0.03 1.25 6.64 -2.38 -0.02 1.24 16 19 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 20 H 0.07 2.02 7.00 -2.39 -0.02 2.01 16 21 H 0.04 1.72 6.35 -2.39 -0.02 1.70 16 22 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 23 H -0.02 -1.29 8.13 -2.39 -0.02 -1.31 16 24 H 0.01 0.52 6.46 -2.39 -0.02 0.51 16 25 H 0.26 16.25 7.20 -92.71 -0.67 15.59 16 26 H 0.07 1.95 7.81 -2.39 -0.02 1.94 16 27 H 0.10 2.16 7.53 -2.39 -0.02 2.14 16 28 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -72.67 247.88 5.83 -66.84 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: 1.20 Total: 1.47 kcal Atomic # 6 Polarization: -43.46 SS G_CDS: 2.30 Total: -41.16 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.29 Total: -59.80 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.02 Total: -24.03 kcal Atomic # 14 Polarization: 54.63 SS G_CDS: 2.05 Total: 56.68 kcal Total: -72.67 5.83 -66.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238276127.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.777 kcal (2) G-P(sol) polarization free energy of solvation -72.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds