Wall clock time and date at job start Mon Mar 30 2020 02:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.48553 * 2 1 4 4 C 1.52961 * 109.48168 * 120.03873 * 2 1 3 5 5 C 1.52960 * 109.81717 * 183.57919 * 4 2 1 6 6 C 1.53224 * 109.40238 * 296.39717 * 5 4 2 7 7 C 1.51265 * 108.53715 * 54.62926 * 6 5 4 8 8 O 1.20764 * 120.85186 * 128.67512 * 7 6 5 9 9 C 1.51267 * 118.30148 * 308.65098 * 7 6 5 10 10 H 1.09002 * 109.62643 * 291.63351 * 9 7 6 11 11 C 1.52998 * 109.78546 * 171.15353 * 9 7 6 12 12 C 1.50706 * 109.47205 * 65.47713 * 11 9 7 13 13 H 1.07994 * 119.99511 * 0.02562 * 12 11 9 14 14 C 1.37875 * 120.00150 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00110 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99995 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46850 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47040 * 119.99773 * 16 14 12 19 19 H 1.48497 * 109.46899 * 239.99722 * 16 14 12 20 20 H 1.08997 * 109.47183 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47706 * 300.03288 * 1 2 3 22 22 H 1.09001 * 109.47058 * 60.03204 * 1 2 3 23 23 H 1.09004 * 109.40955 * 303.68352 * 4 2 1 24 24 H 1.08998 * 109.41263 * 63.46972 * 4 2 1 25 25 H 1.08996 * 109.48219 * 56.37740 * 5 4 2 26 26 H 1.09004 * 109.48170 * 176.42041 * 5 4 2 27 27 H 1.09007 * 109.62741 * 174.34365 * 6 5 4 28 28 H 1.08996 * 109.62974 * 294.72464 * 6 5 4 29 29 H 1.08995 * 109.47570 * 185.47911 * 11 9 7 30 30 H 1.09000 * 109.47204 * 305.48427 * 11 9 7 31 31 H 0.96999 * 119.99871 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0401 -0.7219 1.2484 5 6 3.5670 -0.6490 1.3019 6 6 4.1547 -1.3965 0.1003 7 6 3.5475 -0.8283 -1.1633 8 8 4.2475 -0.4684 -2.0792 9 6 2.0410 -0.7230 -1.2506 10 1 1.6065 -1.7215 -1.2995 11 6 1.6488 0.0699 -2.4989 12 6 2.0528 -0.6994 -3.7302 13 1 2.5402 -1.6581 -3.6322 14 6 1.8003 -0.1792 -4.9819 15 7 1.2072 0.9885 -5.1013 16 14 2.3005 -1.1331 -6.5081 17 1 2.9461 -2.4082 -6.1053 18 1 1.0961 -1.4244 -7.3266 19 1 3.2572 -0.3245 -7.3056 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5143 0.8896 22 1 -0.3633 0.5133 -0.8903 23 1 1.6234 -0.2474 2.1369 24 1 1.7280 -1.7657 1.2162 25 1 3.8825 0.3938 1.2711 26 1 3.9208 -1.1091 2.2246 27 1 5.2363 -1.2625 0.0791 28 1 3.9187 -2.4577 0.1781 29 1 0.5701 0.2264 -2.5060 30 1 2.1559 1.0347 -2.4907 31 1 1.0292 1.3543 -5.9818 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238483834.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:37 Heat of formation + Delta-G solvation = -69.181281 kcal Electronic energy + Delta-G solvation = -12819.812272 eV Core-core repulsion = 10679.055768 eV Total energy + Delta-G solvation = -2140.756505 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.41258 -36.26369 -33.49346 -31.98283 -29.68245 -26.85269 -25.64669 -22.92689 -20.55019 -20.37123 -18.38870 -16.21993 -15.12807 -15.02096 -14.36745 -14.15827 -14.03964 -13.40314 -12.54517 -12.34727 -12.01118 -11.87565 -11.60983 -11.36351 -10.97200 -10.79477 -10.75952 -10.48438 -10.26874 -10.15289 -10.03641 -9.30702 -8.92464 -8.43222 -8.14820 -5.87256 -3.85010 2.88109 3.39512 3.46520 3.51614 4.57903 4.77834 5.03486 5.14370 5.14591 5.41520 5.50233 5.60846 5.81586 5.89291 5.95676 5.98365 6.10488 6.16519 6.26531 6.34024 6.44292 6.53026 6.70816 6.81957 7.03733 7.71284 7.84874 8.09232 8.47011 8.53868 9.15963 9.75707 11.24879 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.045859 B = 0.011236 C = 0.009644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.424072 B = 2491.463210 C = 2902.522753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 H 0.068 0.932 4 C -0.118 4.118 5 C -0.110 4.110 6 C -0.174 4.174 7 C 0.355 3.645 8 O -0.426 6.426 9 C -0.125 4.125 10 H 0.088 0.912 11 C 0.034 3.966 12 C -0.495 4.495 13 H 0.050 0.950 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.889 3.111 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.285 1.285 20 H 0.051 0.949 21 H 0.045 0.955 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.026 0.974 30 H 0.018 0.982 31 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 -3.705 12.843 13.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 H 0.086 0.914 4 C -0.156 4.156 5 C -0.148 4.148 6 C -0.212 4.212 7 C 0.227 3.773 8 O -0.296 6.296 9 C -0.144 4.144 10 H 0.106 0.894 11 C -0.003 4.003 12 C -0.533 4.533 13 H 0.068 0.932 14 C -0.145 4.145 15 N -0.541 5.541 16 Si 0.718 3.282 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.211 1.211 20 H 0.070 0.930 21 H 0.065 0.935 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.045 0.955 30 H 0.037 0.963 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.213 -3.388 12.211 12.730 hybrid contribution 0.279 -0.545 -0.854 1.051 sum 1.493 -3.933 11.357 12.111 Atomic orbital electron populations 1.21833 0.94921 1.01650 1.01716 1.21161 0.96081 0.99493 0.93404 0.91365 1.21665 0.94819 1.01073 0.98038 1.21457 0.95979 1.00555 0.96782 1.22387 1.01216 1.01474 0.96084 1.24771 0.92263 0.74262 0.86026 1.90417 1.64648 1.35869 1.38630 1.22038 0.93114 1.01631 0.97572 0.89438 1.19079 0.96804 0.95056 0.89361 1.21113 1.36958 1.04433 0.90801 0.93157 1.24930 0.95593 0.95065 0.98944 1.69963 1.43378 1.17679 1.23087 0.86575 0.78051 0.80147 0.83457 1.19937 1.21252 1.21144 0.92965 0.93545 0.91359 0.92027 0.91777 0.91826 0.91695 0.90448 0.89363 0.95545 0.96336 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.97 37.16 0.33 -1.83 16 2 C -0.08 -1.33 2.20 -90.52 -0.20 -1.53 16 3 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 4 C -0.12 -1.49 5.09 -26.77 -0.14 -1.63 16 5 C -0.11 -1.36 5.94 -26.64 -0.16 -1.51 16 6 C -0.17 -2.55 6.17 -27.49 -0.17 -2.72 16 7 C 0.35 7.20 6.33 -28.48 -0.18 7.02 16 8 O -0.43 -10.69 15.75 6.00 0.09 -10.60 16 9 C -0.12 -2.53 1.88 -91.37 -0.17 -2.70 16 10 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 11 C 0.03 0.88 4.02 -27.88 -0.11 0.77 16 12 C -0.49 -14.52 7.67 -34.44 -0.26 -14.78 16 13 H 0.05 1.48 7.54 -52.49 -0.40 1.08 16 14 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.98 13.29 55.43 0.74 -27.25 16 16 Si 0.89 22.95 29.54 -169.99 -5.02 17.93 16 17 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.07 1.18 6.51 -51.93 -0.34 0.84 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.03 0.71 6.40 -51.93 -0.33 0.37 16 30 H 0.02 0.53 8.10 -51.93 -0.42 0.11 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 251.89 15.07 3.80 3.80 Total: -1.00 -32.73 251.89 -6.40 -39.13 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: -4.85 Total: -5.62 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -1.16 Total: -17.38 kcal Atomic # 7 Polarization: -27.98 SS G_CDS: 0.74 Total: -27.25 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.73 -6.40 -39.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238483834.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.054 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds