Wall clock time and date at job start Mon Mar 30 2020 02:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.48553 * 2 1 4 4 C 1.52961 * 109.48168 * 120.03873 * 2 1 3 5 5 C 1.52960 * 109.81717 * 183.57919 * 4 2 1 6 6 C 1.53224 * 109.40238 * 296.39717 * 5 4 2 7 7 C 1.51265 * 108.53715 * 54.62926 * 6 5 4 8 8 O 1.20764 * 120.85186 * 128.67512 * 7 6 5 9 9 C 1.51267 * 118.30148 * 308.65098 * 7 6 5 10 10 H 1.09002 * 109.62643 * 291.63351 * 9 7 6 11 11 C 1.52998 * 109.78546 * 171.15353 * 9 7 6 12 12 C 1.50706 * 109.47205 * 65.47713 * 11 9 7 13 13 H 1.07994 * 119.99511 * 0.02562 * 12 11 9 14 14 C 1.37875 * 120.00150 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00110 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99995 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46850 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47040 * 119.99773 * 16 14 12 19 19 H 1.48497 * 109.46899 * 239.99722 * 16 14 12 20 20 H 1.08997 * 109.47183 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47706 * 300.03288 * 1 2 3 22 22 H 1.09001 * 109.47058 * 60.03204 * 1 2 3 23 23 H 1.09004 * 109.40955 * 303.68352 * 4 2 1 24 24 H 1.08998 * 109.41263 * 63.46972 * 4 2 1 25 25 H 1.08996 * 109.48219 * 56.37740 * 5 4 2 26 26 H 1.09004 * 109.48170 * 176.42041 * 5 4 2 27 27 H 1.09007 * 109.62741 * 174.34365 * 6 5 4 28 28 H 1.08996 * 109.62974 * 294.72464 * 6 5 4 29 29 H 1.08995 * 109.47570 * 185.47911 * 11 9 7 30 30 H 1.09000 * 109.47204 * 305.48427 * 11 9 7 31 31 H 0.96999 * 119.99871 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0401 -0.7219 1.2484 5 6 3.5670 -0.6490 1.3019 6 6 4.1547 -1.3965 0.1003 7 6 3.5475 -0.8283 -1.1633 8 8 4.2475 -0.4684 -2.0792 9 6 2.0410 -0.7230 -1.2506 10 1 1.6065 -1.7215 -1.2995 11 6 1.6488 0.0699 -2.4989 12 6 2.0528 -0.6994 -3.7302 13 1 2.5402 -1.6581 -3.6322 14 6 1.8003 -0.1792 -4.9819 15 7 1.2072 0.9885 -5.1013 16 14 2.3005 -1.1331 -6.5081 17 1 2.9461 -2.4082 -6.1053 18 1 1.0961 -1.4244 -7.3266 19 1 3.2572 -0.3245 -7.3056 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5143 0.8896 22 1 -0.3633 0.5133 -0.8903 23 1 1.6234 -0.2474 2.1369 24 1 1.7280 -1.7657 1.2162 25 1 3.8825 0.3938 1.2711 26 1 3.9208 -1.1091 2.2246 27 1 5.2363 -1.2625 0.0791 28 1 3.9187 -2.4577 0.1781 29 1 0.5701 0.2264 -2.5060 30 1 2.1559 1.0347 -2.4907 31 1 1.0292 1.3543 -5.9818 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238483834.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:36 Heat of formation + Delta-G solvation = -89.927147 kcal Electronic energy + Delta-G solvation = -12820.711881 eV Core-core repulsion = 10679.055768 eV Total energy + Delta-G solvation = -2141.656113 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.96025 -37.75026 -35.40814 -33.63460 -31.38770 -28.35754 -27.25012 -24.76261 -22.00255 -21.71644 -19.88759 -18.46486 -16.71300 -16.65789 -16.25037 -15.59358 -15.29087 -14.97102 -14.11026 -13.89757 -13.65558 -13.37145 -13.12062 -12.98339 -12.84051 -12.55776 -12.26288 -11.99856 -11.85408 -11.55250 -11.47609 -11.23588 -10.82316 -10.58650 -9.91474 -8.17987 -6.23238 1.29146 1.32549 1.35206 1.46970 2.40108 3.15048 3.36626 3.92245 3.94728 4.00650 4.20423 4.42442 4.58099 4.62060 4.76009 4.79914 4.96033 4.99504 5.06380 5.13865 5.27183 5.32862 5.36898 5.44922 5.51420 5.58243 5.74442 5.83531 6.25657 6.85996 6.92323 7.41470 8.94605 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.045859 B = 0.011236 C = 0.009644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.424072 B = 2491.463210 C = 2902.522753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 H 0.050 0.950 4 C -0.111 4.111 5 C -0.107 4.107 6 C -0.162 4.162 7 C 0.349 3.651 8 O -0.490 6.490 9 C -0.127 4.127 10 H 0.098 0.902 11 C 0.041 3.959 12 C -0.509 4.509 13 H 0.045 0.955 14 C -0.006 4.006 15 N -0.937 5.937 16 Si 0.957 3.043 17 H -0.268 1.268 18 H -0.271 1.271 19 H -0.284 1.284 20 H 0.064 0.936 21 H 0.076 0.924 22 H 0.032 0.968 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.055 0.945 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.010 0.990 30 H -0.025 1.025 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.064 -5.485 14.952 15.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.098 4.098 3 H 0.069 0.931 4 C -0.148 4.148 5 C -0.144 4.144 6 C -0.199 4.199 7 C 0.226 3.774 8 O -0.364 6.364 9 C -0.146 4.146 10 H 0.116 0.884 11 C 0.004 3.996 12 C -0.547 4.547 13 H 0.063 0.937 14 C -0.202 4.202 15 N -0.578 5.578 16 Si 0.782 3.218 17 H -0.192 1.192 18 H -0.196 1.196 19 H -0.210 1.210 20 H 0.083 0.917 21 H 0.095 0.905 22 H 0.051 0.949 23 H 0.109 0.891 24 H 0.100 0.900 25 H 0.074 0.926 26 H 0.124 0.876 27 H 0.102 0.898 28 H 0.135 0.865 29 H 0.029 0.971 30 H -0.007 1.007 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.377 -5.183 14.351 15.320 hybrid contribution 0.192 0.045 -1.497 1.510 sum 1.569 -5.137 12.854 13.931 Atomic orbital electron populations 1.21803 0.94149 1.02406 1.01460 1.21158 0.96755 0.98560 0.93356 0.93117 1.21645 0.94954 1.01723 0.96480 1.21524 0.95649 1.00192 0.97036 1.22361 1.01327 1.02894 0.93355 1.25564 0.92019 0.72530 0.87287 1.90395 1.65643 1.38973 1.41427 1.22000 0.94267 1.01448 0.96843 0.88424 1.18889 0.95139 0.93681 0.91917 1.21480 1.36475 1.04449 0.92320 0.93664 1.25862 0.95711 0.96155 1.02491 1.70089 1.44504 1.19235 1.24005 0.85522 0.78130 0.78776 0.79381 1.19228 1.19617 1.20961 0.91682 0.90477 0.94908 0.89095 0.90042 0.92612 0.87593 0.89818 0.86493 0.97136 1.00667 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 8.97 71.98 0.65 -3.42 16 2 C -0.08 -2.47 2.20 -10.73 -0.02 -2.49 16 3 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 4 C -0.11 -2.30 5.09 30.57 0.16 -2.14 16 5 C -0.11 -2.16 5.94 30.66 0.18 -1.98 16 6 C -0.16 -4.26 6.17 30.10 0.19 -4.07 16 7 C 0.35 14.17 6.33 29.46 0.19 14.36 16 8 O -0.49 -25.51 15.75 -1.46 -0.02 -25.53 16 9 C -0.13 -5.17 1.88 -11.28 -0.02 -5.19 16 10 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 11 C 0.04 2.24 4.02 29.85 0.12 2.36 16 12 C -0.51 -30.95 7.67 25.60 0.20 -30.76 16 13 H 0.05 2.72 7.54 -2.91 -0.02 2.70 16 14 C -0.01 -0.37 5.46 84.65 0.46 0.10 16 15 N -0.94 -60.28 13.29 21.45 0.28 -60.00 16 16 Si 0.96 47.99 29.54 68.60 2.03 50.02 16 17 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 20 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 21 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.03 1.15 6.51 -2.39 -0.02 1.14 16 23 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 24 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 28 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.01 0.60 6.40 -2.39 -0.02 0.58 16 30 H -0.03 -1.58 8.10 -2.39 -0.02 -1.59 16 31 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -75.28 251.89 5.46 -69.82 By element: Atomic # 1 Polarization: -2.16 SS G_CDS: 1.08 Total: -1.07 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 2.09 Total: -33.24 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: 0.28 Total: -60.00 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.02 Total: -25.53 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -75.28 5.46 -69.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238483834.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.107 kcal (2) G-P(sol) polarization free energy of solvation -75.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds