Wall clock time and date at job start Mon Mar 30 2020 02:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 119.99871 * 2 1 4 4 H 1.48504 * 109.47020 * 269.99877 * 3 2 1 5 5 H 1.48496 * 109.47246 * 29.99927 * 3 2 1 6 6 H 1.48504 * 109.47168 * 150.00419 * 3 2 1 7 7 C 1.37881 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00326 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.58432 * 300.16822 * 9 7 2 11 11 C 1.52044 * 109.52430 * 179.97438 * 9 7 2 12 12 C 1.54101 * 109.16714 * 167.47284 * 11 9 7 13 13 C 1.52455 * 109.26756 * 78.00261 * 12 11 9 14 14 C 1.54024 * 111.05314 * 245.78702 * 13 12 11 15 15 C 1.52659 * 110.40077 * 44.79582 * 14 13 12 16 16 C 1.53667 * 109.42876 * 73.54960 * 15 14 13 17 17 C 1.49514 * 107.76996 * 283.13922 * 16 15 14 18 18 O 1.20755 * 120.42911 * 136.98841 * 17 16 15 19 19 H 0.97000 * 120.00433 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.52152 * 47.56902 * 11 9 7 21 21 H 1.08997 * 109.52517 * 287.38039 * 11 9 7 22 22 H 1.09003 * 109.50789 * 318.06733 * 12 11 9 23 23 H 1.09001 * 109.50687 * 197.94589 * 12 11 9 24 24 H 1.09001 * 109.16159 * 125.38460 * 13 12 11 25 25 H 1.09000 * 109.12180 * 6.16850 * 13 12 11 26 26 H 1.08998 * 109.32064 * 284.50861 * 14 13 12 27 27 H 1.09005 * 109.31566 * 165.07806 * 14 13 12 28 28 H 1.08995 * 109.47904 * 313.55946 * 15 14 13 29 29 H 1.09001 * 109.48203 * 193.53461 * 15 14 13 30 30 H 1.09006 * 109.79924 * 42.70149 * 16 15 14 31 31 H 1.08990 * 109.80427 * 163.57259 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 1 0.6217 -2.5570 0.8898 11 6 2.2380 -3.6558 0.0015 12 6 1.4858 -4.9628 0.3183 13 6 0.7505 -5.4357 -0.9307 14 6 -0.7754 -5.3800 -0.7289 15 6 -1.1770 -4.0641 -0.0674 16 6 -1.0621 -2.9222 -1.0893 17 6 0.3871 -2.5846 -1.2352 18 8 0.8611 -2.3828 -2.3274 19 1 -0.4851 0.8400 0.0004 20 1 3.0022 -3.4825 0.7590 21 1 2.7071 -3.7341 -0.9793 22 1 0.7669 -4.7844 1.1181 23 1 2.1982 -5.7258 0.6321 24 1 1.0449 -6.4615 -1.1523 25 1 1.0241 -4.7959 -1.7697 26 1 -1.0861 -6.2112 -0.0960 27 1 -1.2703 -5.4627 -1.6966 28 1 -0.5162 -3.8648 0.7762 29 1 -2.2060 -4.1338 0.2855 30 1 -1.4646 -3.2444 -2.0497 31 1 -1.6101 -2.0505 -0.7321 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238579165.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:12 Heat of formation + Delta-G solvation = -64.747074 kcal Electronic energy + Delta-G solvation = -13256.333434 eV Core-core repulsion = 11115.769211 eV Total energy + Delta-G solvation = -2140.564223 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.05145 -35.78531 -33.38811 -32.09002 -30.21090 -26.59752 -24.54165 -23.30957 -21.09526 -19.43996 -17.91266 -16.31288 -15.26027 -14.78330 -14.49558 -13.75580 -13.58656 -13.01705 -12.85777 -12.76599 -11.76730 -11.39775 -11.10709 -11.00433 -10.81120 -10.79999 -10.55602 -10.48777 -10.09194 -9.95037 -9.80899 -9.30265 -9.04298 -8.58137 -7.81181 -6.12729 -4.12803 3.30351 3.37206 3.39515 3.68594 4.41304 5.16275 5.29815 5.36392 5.39048 5.72564 5.75332 5.89704 5.97931 6.15741 6.21650 6.32540 6.37550 6.48664 6.59516 6.66093 6.81950 6.86854 6.89785 6.94537 7.13342 7.32269 7.60236 7.85054 8.25091 8.85138 9.22560 9.51397 10.98064 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.050919 B = 0.012979 C = 0.011814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.760020 B = 2156.812307 C = 2369.527427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.000 4.000 10 H 0.050 0.950 11 C -0.102 4.102 12 C -0.130 4.130 13 C -0.129 4.129 14 C -0.118 4.118 15 C -0.125 4.125 16 C -0.170 4.170 17 C 0.405 3.595 18 O -0.500 6.500 19 H 0.264 0.736 20 H 0.059 0.941 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 -8.067 1.612 8.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.542 4.542 8 H 0.080 0.920 9 C -0.019 4.019 10 H 0.068 0.932 11 C -0.140 4.140 12 C -0.167 4.167 13 C -0.167 4.167 14 C -0.156 4.156 15 C -0.162 4.162 16 C -0.208 4.208 17 C 0.283 3.717 18 O -0.377 6.377 19 H 0.073 0.927 20 H 0.078 0.922 21 H 0.074 0.926 22 H 0.088 0.912 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.637 -7.842 1.046 8.079 hybrid contribution 0.192 1.046 -0.018 1.064 sum -1.445 -6.795 1.028 7.023 Atomic orbital electron populations 1.69845 1.05951 1.27116 1.50468 1.25012 0.95047 0.99592 0.94501 0.86458 0.79775 0.82840 0.78212 1.20585 1.21154 1.19742 1.20983 0.93070 0.89366 1.50799 0.91976 1.19249 0.94184 0.94241 0.94270 0.93194 1.21689 0.98129 0.93184 1.01003 1.21968 0.99105 0.97794 0.97808 1.21832 0.95064 1.00542 0.99245 1.21753 0.95955 0.97570 1.00282 1.21817 1.01312 0.93606 0.99440 1.22182 0.99333 1.00013 0.99275 1.24538 0.89434 0.66921 0.90807 1.90167 1.77090 1.39773 1.30639 0.92661 0.92246 0.92640 0.91152 0.93094 0.92911 0.91512 0.92660 0.92567 0.89412 0.92519 0.92022 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.34 12.21 55.43 0.68 -24.66 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.50 -14.05 8.30 -34.44 -0.29 -14.34 16 8 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 9 C 0.00 -0.01 1.68 -93.21 -0.16 -0.17 16 10 H 0.05 1.24 6.16 -51.93 -0.32 0.92 16 11 C -0.10 -2.13 4.89 -26.64 -0.13 -2.26 16 12 C -0.13 -2.19 5.51 -26.44 -0.15 -2.34 16 13 C -0.13 -2.14 5.37 -26.48 -0.14 -2.28 16 14 C -0.12 -1.81 5.70 -26.37 -0.15 -1.96 16 15 C -0.12 -2.15 5.47 -26.56 -0.15 -2.30 16 16 C -0.17 -3.59 5.91 -28.11 -0.17 -3.76 16 17 C 0.40 10.07 2.39 -29.40 -0.07 10.00 16 18 O -0.50 -14.06 17.14 6.00 0.10 -13.95 16 19 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 20 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 21 H 0.05 1.21 7.56 -51.93 -0.39 0.82 16 22 H 0.07 1.16 5.52 -51.93 -0.29 0.87 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.30 5.65 -51.93 -0.29 1.01 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.84 7.87 -51.93 -0.41 0.43 16 28 H 0.09 1.60 3.44 -51.93 -0.18 1.42 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.23 7.85 -51.93 -0.41 0.82 16 31 H 0.10 2.36 7.96 -51.93 -0.41 1.95 16 LS Contribution 239.44 15.07 3.61 3.61 Total: -1.00 -29.96 239.44 -6.47 -36.43 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -4.35 Total: -0.41 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -1.49 Total: -17.81 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.68 Total: -24.66 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.10 Total: -13.95 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.96 -6.47 -36.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238579165.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.319 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds