Wall clock time and date at job start Mon Mar 30 2020 02:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 119.99871 * 2 1 4 4 H 1.48504 * 109.47020 * 269.99877 * 3 2 1 5 5 H 1.48496 * 109.47246 * 29.99927 * 3 2 1 6 6 H 1.48504 * 109.47168 * 150.00419 * 3 2 1 7 7 C 1.37881 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00326 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.58432 * 300.16822 * 9 7 2 11 11 C 1.52044 * 109.52430 * 179.97438 * 9 7 2 12 12 C 1.54101 * 109.16714 * 167.47284 * 11 9 7 13 13 C 1.52455 * 109.26756 * 78.00261 * 12 11 9 14 14 C 1.54024 * 111.05314 * 245.78702 * 13 12 11 15 15 C 1.52659 * 110.40077 * 44.79582 * 14 13 12 16 16 C 1.53667 * 109.42876 * 73.54960 * 15 14 13 17 17 C 1.49514 * 107.76996 * 283.13922 * 16 15 14 18 18 O 1.20755 * 120.42911 * 136.98841 * 17 16 15 19 19 H 0.97000 * 120.00433 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.52152 * 47.56902 * 11 9 7 21 21 H 1.08997 * 109.52517 * 287.38039 * 11 9 7 22 22 H 1.09003 * 109.50789 * 318.06733 * 12 11 9 23 23 H 1.09001 * 109.50687 * 197.94589 * 12 11 9 24 24 H 1.09001 * 109.16159 * 125.38460 * 13 12 11 25 25 H 1.09000 * 109.12180 * 6.16850 * 13 12 11 26 26 H 1.08998 * 109.32064 * 284.50861 * 14 13 12 27 27 H 1.09005 * 109.31566 * 165.07806 * 14 13 12 28 28 H 1.08995 * 109.47904 * 313.55946 * 15 14 13 29 29 H 1.09001 * 109.48203 * 193.53461 * 15 14 13 30 30 H 1.09006 * 109.79924 * 42.70149 * 16 15 14 31 31 H 1.08990 * 109.80427 * 163.57259 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 1 0.6217 -2.5570 0.8898 11 6 2.2380 -3.6558 0.0015 12 6 1.4858 -4.9628 0.3183 13 6 0.7505 -5.4357 -0.9307 14 6 -0.7754 -5.3800 -0.7289 15 6 -1.1770 -4.0641 -0.0674 16 6 -1.0621 -2.9222 -1.0893 17 6 0.3871 -2.5846 -1.2352 18 8 0.8611 -2.3828 -2.3274 19 1 -0.4851 0.8400 0.0004 20 1 3.0022 -3.4825 0.7590 21 1 2.7071 -3.7341 -0.9793 22 1 0.7669 -4.7844 1.1181 23 1 2.1982 -5.7258 0.6321 24 1 1.0449 -6.4615 -1.1523 25 1 1.0241 -4.7959 -1.7697 26 1 -1.0861 -6.2112 -0.0960 27 1 -1.2703 -5.4627 -1.6966 28 1 -0.5162 -3.8648 0.7762 29 1 -2.2060 -4.1338 0.2855 30 1 -1.4646 -3.2444 -2.0497 31 1 -1.6101 -2.0505 -0.7321 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238579165.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:12 Heat of formation + Delta-G solvation = -82.319360 kcal Electronic energy + Delta-G solvation = -13257.095425 eV Core-core repulsion = 11115.769211 eV Total energy + Delta-G solvation = -2141.326215 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.84856 -37.48249 -35.30926 -33.79811 -31.96899 -28.35228 -26.13109 -25.16409 -22.69805 -20.88998 -19.77515 -18.34405 -17.01354 -16.50606 -16.26369 -15.59599 -15.15119 -14.61190 -14.51703 -14.46017 -13.65433 -13.21403 -12.95246 -12.64954 -12.59682 -12.42421 -12.25300 -12.13496 -11.56679 -11.48760 -11.37456 -11.03389 -10.78048 -10.66823 -9.77497 -8.25383 -6.31350 1.35184 1.38870 1.47429 1.72884 2.38509 3.07937 3.81289 3.98456 4.05799 4.16217 4.30343 4.42953 4.46792 4.60692 4.82300 4.92883 4.98299 5.02208 5.13714 5.21166 5.24217 5.30981 5.40919 5.49213 5.53482 5.61859 5.69442 5.78982 6.19864 6.71652 7.25916 7.35877 8.83853 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.050919 B = 0.012979 C = 0.011814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.760020 B = 2156.812307 C = 2369.527427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.287 1.287 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.531 4.531 8 H 0.053 0.947 9 C -0.006 4.006 10 H 0.047 0.953 11 C -0.100 4.100 12 C -0.122 4.122 13 C -0.131 4.131 14 C -0.115 4.115 15 C -0.120 4.120 16 C -0.168 4.168 17 C 0.404 3.596 18 O -0.544 6.544 19 H 0.265 0.735 20 H 0.062 0.938 21 H 0.035 0.965 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.029 0.971 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 -9.351 2.519 9.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.213 1.213 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.569 4.569 8 H 0.072 0.928 9 C -0.025 4.025 10 H 0.065 0.935 11 C -0.138 4.138 12 C -0.159 4.159 13 C -0.169 4.169 14 C -0.152 4.152 15 C -0.157 4.157 16 C -0.206 4.206 17 C 0.286 3.714 18 O -0.424 6.424 19 H 0.074 0.926 20 H 0.080 0.920 21 H 0.054 0.946 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.099 0.901 25 H 0.048 0.952 26 H 0.109 0.891 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.111 -9.138 1.978 9.585 hybrid contribution 0.353 1.452 -0.309 1.526 sum -1.758 -7.686 1.669 8.059 Atomic orbital electron populations 1.69924 1.06790 1.27808 1.50790 1.25760 0.96020 1.02635 0.94318 0.85584 0.79198 0.79347 0.77799 1.21325 1.19928 1.18714 1.21370 0.93115 0.91315 1.51095 0.92842 1.19295 0.94778 0.94461 0.93962 0.93514 1.21635 0.97772 0.94284 1.00065 1.21916 0.99575 0.96079 0.98309 1.21847 0.96154 1.01329 0.97534 1.21759 0.94890 0.97414 1.01137 1.21823 1.02958 0.92979 0.97913 1.22145 0.96187 1.01119 1.01110 1.24946 0.91179 0.65295 0.90016 1.90140 1.78269 1.41989 1.31982 0.92560 0.91972 0.94595 0.90271 0.90192 0.90059 0.95183 0.89119 0.92088 0.90324 0.89734 0.91213 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.20 12.21 21.45 0.26 -51.94 16 2 C 0.01 0.69 5.30 84.66 0.45 1.14 16 3 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 4 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 5 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.53 -30.12 8.30 25.60 0.21 -29.91 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C -0.01 -0.30 1.68 -12.47 -0.02 -0.32 16 10 H 0.05 2.34 6.16 -2.39 -0.01 2.32 16 11 C -0.10 -4.15 4.89 30.65 0.15 -4.00 16 12 C -0.12 -3.82 5.51 30.79 0.17 -3.65 16 13 C -0.13 -4.02 5.37 30.76 0.17 -3.85 16 14 C -0.11 -3.12 5.70 30.83 0.18 -2.94 16 15 C -0.12 -3.84 5.47 30.71 0.17 -3.67 16 16 C -0.17 -7.01 5.91 29.70 0.18 -6.83 16 17 C 0.40 20.38 2.39 28.86 0.07 20.45 16 18 O -0.54 -31.50 17.14 -1.43 -0.02 -31.53 16 19 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 20 H 0.06 2.48 8.07 -2.39 -0.02 2.46 16 21 H 0.04 1.60 7.56 -2.39 -0.02 1.58 16 22 H 0.08 2.37 5.52 -2.39 -0.01 2.36 16 23 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.03 1.14 5.65 -2.39 -0.01 1.13 16 26 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.06 1.62 7.87 -2.38 -0.02 1.60 16 28 H 0.08 2.69 3.44 -2.39 -0.01 2.69 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.07 2.75 7.85 -2.38 -0.02 2.73 16 31 H 0.09 4.04 7.96 -2.39 -0.02 4.02 16 Total: -1.00 -65.20 239.44 5.08 -60.11 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 1.11 Total: 9.92 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 1.71 Total: -33.58 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.26 Total: -51.94 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.02 Total: -31.53 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -65.20 5.08 -60.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238579165.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.204 kcal (2) G-P(sol) polarization free energy of solvation -65.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds