Wall clock time and date at job start Mon Mar 30 2020 02:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00184 * 2 1 4 4 H 1.48493 * 109.47010 * 89.99783 * 3 2 1 5 5 H 1.48498 * 109.47232 * 210.00282 * 3 2 1 6 6 H 1.48510 * 109.47064 * 330.00199 * 3 2 1 7 7 C 1.37879 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00003 * 172.48977 * 7 2 1 9 9 C 1.50704 * 120.00245 * 352.49355 * 7 2 1 10 10 H 1.08999 * 109.45122 * 328.84647 * 9 7 2 11 11 C 1.52331 * 109.45357 * 88.78338 * 9 7 2 12 12 C 1.52959 * 110.20944 * 164.42422 * 11 9 7 13 13 C 1.53572 * 109.43485 * 78.33909 * 12 11 9 14 14 C 1.53372 * 108.08018 * 287.88139 * 13 12 11 15 15 C 1.50237 * 109.89939 * 316.59600 * 14 13 12 16 16 O 1.20759 * 120.13003 * 292.61922 * 15 14 13 17 17 C 1.51204 * 119.74226 * 112.59802 * 15 14 13 18 18 C 1.53454 * 109.45156 * 208.89441 * 9 7 2 19 19 H 0.97001 * 120.00273 * 174.45074 * 1 2 3 20 20 H 1.08997 * 109.35023 * 284.65560 * 11 9 7 21 21 H 1.09005 * 109.34857 * 44.20601 * 11 9 7 22 22 H 1.08998 * 109.47906 * 318.35006 * 12 11 9 23 23 H 1.08996 * 109.48552 * 198.32877 * 12 11 9 24 24 H 1.09001 * 109.74469 * 168.23906 * 13 12 11 25 25 H 1.09000 * 109.74457 * 47.52636 * 13 12 11 26 26 H 1.08996 * 109.40083 * 196.46097 * 14 13 12 27 27 H 1.09006 * 109.39921 * 76.72637 * 14 13 12 28 28 H 1.08999 * 109.91390 * 168.95381 * 17 15 14 29 29 H 1.09008 * 109.91389 * 47.78613 * 17 15 14 30 30 H 1.08998 * 109.69207 * 245.48232 * 18 9 7 31 31 H 1.09000 * 109.70071 * 6.04304 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0776 -1.1981 -0.1228 9 6 1.2607 -2.4937 0.1694 10 1 0.3832 -2.3306 0.7951 11 6 0.8215 -3.0091 -1.1952 12 6 0.4175 -4.4812 -1.0991 13 6 -0.9911 -4.5863 -0.4964 14 6 -0.8978 -4.2404 0.9949 15 6 0.3022 -4.9108 1.6012 16 8 0.3384 -6.1136 1.7016 17 6 1.4647 -4.0735 2.0847 18 6 2.1799 -3.5251 0.8371 19 1 -0.4850 -0.8361 -0.0812 20 1 -0.0283 -2.4235 -1.5460 21 1 1.6447 -2.9060 -1.9022 22 1 1.1256 -5.0116 -0.4624 23 1 0.4209 -4.9249 -2.0946 24 1 -1.3679 -5.6021 -0.6158 25 1 -1.6587 -3.8842 -0.9961 26 1 -1.7992 -4.5829 1.5030 27 1 -0.8065 -3.1604 1.1110 28 1 2.1508 -4.6906 2.6648 29 1 1.0990 -3.2482 2.6958 30 1 2.3835 -4.3399 0.1424 31 1 3.1158 -3.0487 1.1291 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238582287.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:00 Heat of formation + Delta-G solvation = -59.018572 kcal Electronic energy + Delta-G solvation = -13158.467551 eV Core-core repulsion = 11018.151735 eV Total energy + Delta-G solvation = -2140.315817 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.81658 -36.65622 -33.31770 -32.02360 -30.26752 -26.72515 -24.59730 -23.43444 -21.22945 -19.48925 -18.33057 -16.99126 -15.47924 -14.98743 -14.76938 -14.31435 -13.76452 -13.32231 -13.14605 -12.73136 -12.01956 -11.70600 -11.37320 -11.11227 -10.99485 -10.77719 -10.46370 -10.40086 -10.14922 -10.01753 -9.73206 -9.09156 -8.98573 -8.38386 -8.28860 -6.36391 -4.07159 2.39793 3.42316 3.44734 3.60585 4.51436 4.56667 5.21176 5.32594 5.39765 5.42664 5.63617 5.75011 5.81155 6.00756 6.08399 6.12460 6.22070 6.35384 6.45190 6.53601 6.55731 6.68081 6.82097 6.89801 7.15562 7.48854 7.61859 7.94327 8.24145 8.44620 8.87219 9.62933 11.01525 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.050493 B = 0.011610 C = 0.010866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.394555 B = 2411.119271 C = 2576.229998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.021 3.979 3 Si 1.064 2.936 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.592 4.592 8 H 0.048 0.952 9 C 0.017 3.983 10 H 0.048 0.952 11 C -0.109 4.109 12 C -0.142 4.142 13 C -0.100 4.100 14 C -0.183 4.183 15 C 0.376 3.624 16 O -0.483 6.483 17 C -0.169 4.169 18 C -0.107 4.107 19 H 0.270 0.730 20 H 0.052 0.948 21 H 0.048 0.952 22 H 0.065 0.935 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.111 -5.377 0.920 5.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.183 4.183 3 Si 0.893 3.107 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.630 4.630 8 H 0.067 0.933 9 C -0.001 4.001 10 H 0.066 0.934 11 C -0.147 4.147 12 C -0.179 4.179 13 C -0.138 4.138 14 C -0.220 4.220 15 C 0.254 3.746 16 O -0.359 6.359 17 C -0.207 4.207 18 C -0.144 4.144 19 H 0.081 0.919 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.083 0.917 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.124 0.876 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.289 -4.354 1.037 4.485 hybrid contribution 0.213 -1.519 -0.124 1.539 sum -0.076 -5.873 0.913 5.944 Atomic orbital electron populations 1.70779 1.06871 1.30816 1.46496 1.25755 0.96504 1.02444 0.93646 0.83609 0.74775 0.75513 0.76775 1.21471 1.21576 1.21224 1.22096 0.94729 0.91826 1.54314 0.93328 1.19261 0.95408 0.93395 0.92069 0.93390 1.21772 1.00115 0.91833 1.01003 1.22216 0.95964 0.99749 0.99940 1.21566 0.98186 1.00881 0.93146 1.22425 0.97370 1.04429 0.97808 1.24724 0.88491 0.89022 0.72379 1.90319 1.80939 1.17671 1.46983 1.22606 0.97003 1.00544 1.00506 1.22114 0.99770 0.98574 0.93960 0.91877 0.92958 0.93309 0.91698 0.93200 0.92441 0.90935 0.90091 0.87595 0.90832 0.88846 0.92811 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.99 13.55 55.43 0.75 -25.23 16 2 C 0.02 0.56 5.44 -17.82 -0.10 0.46 16 3 Si 1.06 24.34 29.91 -169.99 -5.08 19.26 16 4 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.59 -15.57 8.01 -34.44 -0.28 -15.84 16 8 H 0.05 1.30 7.67 -52.48 -0.40 0.89 16 9 C 0.02 0.38 1.26 -91.88 -0.12 0.27 16 10 H 0.05 1.13 3.35 -51.93 -0.17 0.95 16 11 C -0.11 -2.31 4.91 -27.09 -0.13 -2.45 16 12 C -0.14 -2.56 5.42 -26.46 -0.14 -2.70 16 13 C -0.10 -1.67 5.94 -26.24 -0.16 -1.82 16 14 C -0.18 -3.11 5.42 -27.91 -0.15 -3.26 16 15 C 0.38 6.84 4.29 -29.01 -0.12 6.72 16 16 O -0.48 -9.75 17.82 6.00 0.11 -9.64 16 17 C -0.17 -3.00 5.83 -27.16 -0.16 -3.16 16 18 C -0.11 -2.13 5.24 -26.02 -0.14 -2.26 16 19 H 0.27 7.49 6.28 -40.82 -0.26 7.24 16 20 H 0.05 1.17 7.22 -51.93 -0.37 0.80 16 21 H 0.05 1.07 8.02 -51.93 -0.42 0.65 16 22 H 0.06 1.22 3.82 -51.93 -0.20 1.02 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.07 1.16 7.89 -51.93 -0.41 0.76 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.11 1.95 5.20 -51.93 -0.27 1.68 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.09 1.63 7.97 -51.92 -0.41 1.21 16 30 H 0.05 1.04 5.56 -51.93 -0.29 0.75 16 31 H 0.07 1.39 7.52 -51.93 -0.39 1.00 16 LS Contribution 237.42 15.07 3.58 3.58 Total: -1.00 -28.61 237.42 -6.22 -34.83 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.08 Total: 1.26 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -1.49 Total: -24.05 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.75 Total: -25.23 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.11 Total: -9.64 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.08 Total: 19.26 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -28.61 -6.22 -34.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238582287.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.189 kcal (2) G-P(sol) polarization free energy of solvation -28.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds