Wall clock time and date at job start Mon Mar 30 2020 02:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00184 * 2 1 4 4 H 1.48493 * 109.47010 * 89.99783 * 3 2 1 5 5 H 1.48498 * 109.47232 * 210.00282 * 3 2 1 6 6 H 1.48510 * 109.47064 * 330.00199 * 3 2 1 7 7 C 1.37879 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00003 * 172.48977 * 7 2 1 9 9 C 1.50704 * 120.00245 * 352.49355 * 7 2 1 10 10 H 1.08999 * 109.45122 * 328.84647 * 9 7 2 11 11 C 1.52331 * 109.45357 * 88.78338 * 9 7 2 12 12 C 1.52959 * 110.20944 * 164.42422 * 11 9 7 13 13 C 1.53572 * 109.43485 * 78.33909 * 12 11 9 14 14 C 1.53372 * 108.08018 * 287.88139 * 13 12 11 15 15 C 1.50237 * 109.89939 * 316.59600 * 14 13 12 16 16 O 1.20759 * 120.13003 * 292.61922 * 15 14 13 17 17 C 1.51204 * 119.74226 * 112.59802 * 15 14 13 18 18 C 1.53454 * 109.45156 * 208.89441 * 9 7 2 19 19 H 0.97001 * 120.00273 * 174.45074 * 1 2 3 20 20 H 1.08997 * 109.35023 * 284.65560 * 11 9 7 21 21 H 1.09005 * 109.34857 * 44.20601 * 11 9 7 22 22 H 1.08998 * 109.47906 * 318.35006 * 12 11 9 23 23 H 1.08996 * 109.48552 * 198.32877 * 12 11 9 24 24 H 1.09001 * 109.74469 * 168.23906 * 13 12 11 25 25 H 1.09000 * 109.74457 * 47.52636 * 13 12 11 26 26 H 1.08996 * 109.40083 * 196.46097 * 14 13 12 27 27 H 1.09006 * 109.39921 * 76.72637 * 14 13 12 28 28 H 1.08999 * 109.91390 * 168.95381 * 17 15 14 29 29 H 1.09008 * 109.91389 * 47.78613 * 17 15 14 30 30 H 1.08998 * 109.69207 * 245.48232 * 18 9 7 31 31 H 1.09000 * 109.70071 * 6.04304 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0776 -1.1981 -0.1228 9 6 1.2607 -2.4937 0.1694 10 1 0.3832 -2.3306 0.7951 11 6 0.8215 -3.0091 -1.1952 12 6 0.4175 -4.4812 -1.0991 13 6 -0.9911 -4.5863 -0.4964 14 6 -0.8978 -4.2404 0.9949 15 6 0.3022 -4.9108 1.6012 16 8 0.3384 -6.1136 1.7016 17 6 1.4647 -4.0735 2.0847 18 6 2.1799 -3.5251 0.8371 19 1 -0.4850 -0.8361 -0.0812 20 1 -0.0283 -2.4235 -1.5460 21 1 1.6447 -2.9060 -1.9022 22 1 1.1256 -5.0116 -0.4624 23 1 0.4209 -4.9249 -2.0946 24 1 -1.3679 -5.6021 -0.6158 25 1 -1.6587 -3.8842 -0.9961 26 1 -1.7992 -4.5829 1.5030 27 1 -0.8065 -3.1604 1.1110 28 1 2.1508 -4.6906 2.6648 29 1 1.0990 -3.2482 2.6958 30 1 2.3835 -4.3399 0.1424 31 1 3.1158 -3.0487 1.1291 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238582287.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:59 Heat of formation + Delta-G solvation = -74.635930 kcal Electronic energy + Delta-G solvation = -13159.144771 eV Core-core repulsion = 11018.151735 eV Total energy + Delta-G solvation = -2140.993036 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.32608 -38.29234 -35.05157 -33.70974 -31.86830 -28.42204 -26.21191 -25.27561 -22.73629 -21.16875 -19.83550 -18.91182 -17.02845 -16.47183 -16.31747 -15.86237 -15.59150 -14.94008 -14.79613 -14.37064 -13.48249 -13.31566 -13.04970 -12.70463 -12.64657 -12.52434 -12.09294 -11.93212 -11.90597 -11.64161 -11.38069 -10.81360 -10.48708 -10.35720 -10.18531 -8.48930 -6.19375 0.94071 1.57402 1.63800 1.80966 2.62446 3.14772 3.27290 3.82997 3.95900 4.00435 4.18551 4.23521 4.30159 4.50361 4.60060 4.66941 4.80121 4.83109 4.97129 5.06302 5.09619 5.15706 5.20120 5.21655 5.47427 5.71029 5.84023 6.23992 6.37861 6.50183 6.80374 7.56426 8.90523 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.050493 B = 0.011610 C = 0.010866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.394555 B = 2411.119271 C = 2576.229998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.026 4.026 3 Si 1.105 2.895 4 H -0.276 1.276 5 H -0.277 1.277 6 H -0.289 1.289 7 C -0.603 4.603 8 H 0.039 0.961 9 C 0.012 3.988 10 H 0.042 0.958 11 C -0.100 4.100 12 C -0.135 4.135 13 C -0.098 4.098 14 C -0.182 4.182 15 C 0.381 3.619 16 O -0.500 6.500 17 C -0.165 4.165 18 C -0.101 4.101 19 H 0.264 0.736 20 H 0.033 0.967 21 H 0.034 0.966 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.027 -6.030 1.143 6.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.225 4.225 3 Si 0.929 3.071 4 H -0.202 1.202 5 H -0.203 1.203 6 H -0.215 1.215 7 C -0.641 4.641 8 H 0.057 0.943 9 C -0.007 4.007 10 H 0.060 0.940 11 C -0.139 4.139 12 C -0.172 4.172 13 C -0.136 4.136 14 C -0.219 4.219 15 C 0.261 3.739 16 O -0.377 6.377 17 C -0.203 4.203 18 C -0.139 4.139 19 H 0.075 0.925 20 H 0.052 0.948 21 H 0.053 0.947 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.122 0.878 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.196 -5.019 1.264 5.180 hybrid contribution 0.206 -1.341 -0.206 1.373 sum 0.011 -6.361 1.057 6.448 Atomic orbital electron populations 1.70869 1.07624 1.30607 1.48589 1.26908 0.96664 1.05619 0.93285 0.83068 0.74195 0.72385 0.77468 1.20159 1.20259 1.21530 1.22475 0.94551 0.93649 1.53395 0.94289 1.19288 0.95420 0.92918 0.93039 0.93992 1.21583 0.98786 0.93941 0.99560 1.22121 0.96815 0.97085 1.01163 1.21581 0.97253 1.02153 0.92603 1.22401 0.97938 1.03186 0.98379 1.24811 0.88709 0.88656 0.71765 1.90321 1.81327 1.18290 1.47777 1.22567 0.97194 1.00821 0.99671 1.21967 0.99014 0.97986 0.94895 0.92545 0.94818 0.94696 0.92039 0.91387 0.90526 0.90498 0.87783 0.89293 0.89060 0.88646 0.92103 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.81 13.55 21.45 0.29 -53.52 16 2 C -0.03 -1.41 5.44 84.66 0.46 -0.95 16 3 Si 1.10 48.77 29.91 68.60 2.05 50.82 16 4 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.60 -31.80 8.01 25.60 0.21 -31.59 16 8 H 0.04 2.08 7.67 -2.91 -0.02 2.06 16 9 C 0.01 0.52 1.26 -11.61 -0.01 0.51 16 10 H 0.04 1.98 3.35 -2.39 -0.01 1.97 16 11 C -0.10 -4.23 4.91 30.36 0.15 -4.08 16 12 C -0.13 -4.63 5.42 30.77 0.17 -4.47 16 13 C -0.10 -3.06 5.94 30.91 0.18 -2.87 16 14 C -0.18 -5.84 5.42 29.83 0.16 -5.68 16 15 C 0.38 13.11 4.29 29.12 0.13 13.23 16 16 O -0.50 -18.97 17.82 -1.45 -0.03 -18.99 16 17 C -0.16 -5.58 5.83 30.31 0.18 -5.41 16 18 C -0.10 -3.93 5.24 31.05 0.16 -3.76 16 19 H 0.26 14.88 6.28 -92.71 -0.58 14.30 16 20 H 0.03 1.51 7.22 -2.39 -0.02 1.50 16 21 H 0.03 1.52 8.02 -2.38 -0.02 1.50 16 22 H 0.06 2.18 3.82 -2.39 -0.01 2.17 16 23 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 24 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.08 2.33 7.89 -2.39 -0.02 2.31 16 26 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 27 H 0.09 3.21 5.20 -2.38 -0.01 3.20 16 28 H 0.09 2.77 8.14 -2.39 -0.02 2.76 16 29 H 0.10 3.21 7.97 -2.38 -0.02 3.19 16 30 H 0.06 2.27 5.56 -2.39 -0.01 2.25 16 31 H 0.06 2.45 7.52 -2.39 -0.02 2.44 16 Total: -1.00 -59.32 237.42 5.40 -53.92 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 1.30 Total: 12.84 kcal Atomic # 6 Polarization: -46.85 SS G_CDS: 1.78 Total: -45.07 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.29 Total: -53.52 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.03 Total: -18.99 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 2.05 Total: 50.82 kcal Total: -59.32 5.40 -53.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238582287.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.711 kcal (2) G-P(sol) polarization free energy of solvation -59.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds