Wall clock time and date at job start Mon Mar 30 2020 02:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.38956 * 55.19218 * 10 9 7 12 12 C 1.47203 * 109.39172 * 175.00063 * 10 9 7 13 13 C 1.52207 * 114.83652 * 183.51617 * 12 10 9 14 14 C 1.50997 * 109.23923 * 272.20697 * 13 12 10 15 15 C 1.54044 * 109.49432 * 93.65191 * 14 13 12 16 16 C 1.51815 * 111.59092 * 319.92491 * 15 14 13 17 17 O 1.20764 * 118.65793 * 138.12175 * 16 15 14 18 18 C 1.48982 * 122.68364 * 318.13609 * 16 15 14 19 19 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 21 21 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 22 22 H 1.08998 * 108.40895 * 304.90308 * 12 10 9 23 23 H 1.08995 * 108.40885 * 62.12684 * 12 10 9 24 24 H 1.08996 * 109.51075 * 32.13849 * 13 12 10 25 25 H 1.08997 * 109.50514 * 152.28465 * 13 12 10 26 26 H 1.09000 * 109.46884 * 213.65982 * 14 13 12 27 27 H 1.09007 * 109.46914 * 333.64675 * 14 13 12 28 28 H 1.09000 * 109.05551 * 80.46571 * 15 14 13 29 29 H 1.08997 * 109.06046 * 199.38129 * 15 14 13 30 30 H 1.08995 * 109.44119 * 329.34028 * 18 16 15 31 31 H 1.09003 * 109.43817 * 209.45314 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 1 2.9259 -3.5553 0.8465 12 6 1.5115 -4.9323 0.1228 13 6 2.3900 -6.1714 0.2211 14 6 2.7045 -6.6699 -1.1691 15 6 4.0444 -6.0724 -1.6386 16 6 4.1831 -4.6182 -1.2252 17 8 5.2480 -4.2348 -0.8042 18 6 3.0589 -3.6449 -1.3174 19 1 -0.4850 -0.8401 -0.0004 20 1 0.6241 -2.5566 0.8903 21 1 0.6247 -2.5571 -0.8896 22 1 0.8839 -4.8839 1.0127 23 1 0.8621 -5.0388 -0.7461 24 1 3.3172 -5.9203 0.7362 25 1 1.8633 -6.9479 0.7758 26 1 2.7759 -7.7575 -1.1575 27 1 1.9116 -6.3652 -1.8523 28 1 4.8622 -6.6459 -1.2022 29 1 4.1035 -6.1407 -2.7248 30 1 2.4088 -3.9191 -2.1482 31 1 3.4580 -2.6445 -1.4846 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238582304.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:04 Heat of formation + Delta-G solvation = -74.627626 kcal Electronic energy + Delta-G solvation = -12702.391528 eV Core-core repulsion = 10561.398852 eV Total energy + Delta-G solvation = -2140.992676 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.76585 -36.81299 -34.17651 -32.12859 -29.92689 -27.24341 -24.97855 -23.27564 -21.40047 -19.75148 -18.46150 -16.70092 -15.94975 -15.35422 -14.82780 -13.93569 -13.71957 -13.53908 -13.19402 -12.90742 -12.48436 -11.98421 -11.67447 -11.19905 -11.06770 -10.85850 -10.69941 -10.55636 -10.16132 -10.05737 -9.82721 -9.68349 -9.00189 -8.49352 -8.30946 -6.33710 -4.02551 2.33906 3.47177 3.48583 3.67156 4.41904 4.56841 4.81942 4.97769 5.14728 5.34225 5.37318 5.44684 5.64602 5.73712 5.81058 5.91743 5.99793 6.11676 6.19459 6.37053 6.45690 6.47947 6.78805 6.88093 6.91064 7.35031 7.49350 7.89755 8.23596 8.49556 8.91096 9.68733 11.06658 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.049742 B = 0.009811 C = 0.008607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.770050 B = 2853.245125 C = 3252.571353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.066 2.934 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.599 4.599 8 H 0.051 0.949 9 C 0.016 3.984 10 C -0.058 4.058 11 H 0.061 0.939 12 C -0.120 4.120 13 C -0.126 4.126 14 C -0.110 4.110 15 C -0.169 4.169 16 C 0.363 3.637 17 O -0.475 6.475 18 C -0.156 4.156 19 H 0.268 0.732 20 H 0.011 0.989 21 H 0.010 0.990 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.687 -12.010 -2.945 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.189 4.189 3 Si 0.894 3.106 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.637 4.637 8 H 0.070 0.930 9 C -0.021 4.021 10 C -0.076 4.076 11 H 0.079 0.921 12 C -0.158 4.158 13 C -0.164 4.164 14 C -0.148 4.148 15 C -0.207 4.207 16 C 0.240 3.760 17 O -0.349 6.349 18 C -0.193 4.193 19 H 0.078 0.922 20 H 0.029 0.971 21 H 0.028 0.972 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.051 -10.159 -2.723 11.271 hybrid contribution 0.148 -1.747 -0.081 1.755 sum 4.199 -11.906 -2.804 12.933 Atomic orbital electron populations 1.70794 1.06883 1.30506 1.46890 1.25813 0.96531 1.02690 0.93852 0.83585 0.74909 0.75468 0.76624 1.21437 1.21441 1.20824 1.22075 0.94393 0.91890 1.55379 0.93042 1.19281 0.93985 0.92646 0.96211 1.20205 0.97519 0.95332 0.94576 0.92076 1.20662 0.98666 0.94155 1.02290 1.21229 1.00497 0.98047 0.96617 1.21422 0.96158 0.99760 0.97423 1.22603 0.99820 0.95424 1.02823 1.24800 0.88715 0.90633 0.71869 1.90365 1.29633 1.80440 1.34507 1.22210 0.96752 1.00058 1.00329 0.92182 0.97095 0.97190 0.92370 0.92217 0.92067 0.91813 0.91566 0.91005 0.90072 0.89173 0.90542 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.98 13.65 55.43 0.76 -27.22 16 2 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 3 Si 1.07 25.72 29.90 -169.99 -5.08 20.64 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.60 -16.96 8.27 -34.44 -0.28 -17.24 16 8 H 0.05 1.46 7.10 -52.49 -0.37 1.09 16 9 C 0.02 0.39 3.72 -27.88 -0.10 0.29 16 10 C -0.06 -1.17 1.91 -92.35 -0.18 -1.34 16 11 H 0.06 1.34 8.12 -51.93 -0.42 0.92 16 12 C -0.12 -1.95 4.34 -29.92 -0.13 -2.08 16 13 C -0.13 -1.69 5.49 -28.14 -0.15 -1.84 16 14 C -0.11 -1.25 5.80 -27.19 -0.16 -1.41 16 15 C -0.17 -2.13 6.00 -26.79 -0.16 -2.29 16 16 C 0.36 6.25 5.23 -29.30 -0.15 6.10 16 17 O -0.47 -9.85 17.74 6.00 0.11 -9.74 16 18 C -0.16 -2.93 4.80 -27.65 -0.13 -3.07 16 19 H 0.27 8.11 7.22 -40.82 -0.29 7.82 16 20 H 0.01 0.29 7.95 -51.93 -0.41 -0.13 16 21 H 0.01 0.25 8.01 -51.93 -0.42 -0.16 16 22 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 23 H 0.06 0.92 7.26 -51.93 -0.38 0.54 16 24 H 0.06 0.90 7.07 -51.93 -0.37 0.53 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.79 7.25 -51.93 -0.38 0.42 16 28 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 31 H 0.10 2.22 6.73 -51.93 -0.35 1.88 16 LS Contribution 249.04 15.07 3.75 3.75 Total: -1.00 -31.47 249.04 -6.73 -38.20 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -4.71 Total: -3.06 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -1.55 Total: -22.57 kcal Atomic # 7 Polarization: -27.98 SS G_CDS: 0.76 Total: -27.22 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.11 Total: -9.74 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.47 -6.73 -38.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238582304.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.427 kcal (2) G-P(sol) polarization free energy of solvation -31.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds