Wall clock time and date at job start Mon Mar 30 2020 02:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48500 * 109.46790 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47233 * 300.00164 * 3 2 1 6 6 H 1.48493 * 109.47285 * 60.00557 * 3 2 1 7 7 C 1.37876 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00356 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46665 * 60.00321 * 9 7 2 11 11 C 1.50706 * 109.47294 * 300.00702 * 9 7 2 12 12 O 1.20755 * 120.00374 * 119.99459 * 11 9 7 13 13 C 1.52997 * 109.47342 * 180.02562 * 9 7 2 14 14 C 1.52996 * 109.46975 * 299.99900 * 13 9 7 15 15 C 1.53000 * 109.47328 * 180.02562 * 14 13 9 16 16 C 1.52997 * 109.47060 * 60.00126 * 15 14 13 17 17 C 1.53006 * 109.47127 * 300.00449 * 16 15 14 18 18 C 1.52997 * 109.47164 * 59.99836 * 17 16 15 19 19 H 0.96996 * 119.99885 * 359.97438 * 1 2 3 20 20 H 1.08000 * 119.99302 * 299.99711 * 11 9 7 21 21 H 1.08992 * 109.47280 * 60.00435 * 13 9 7 22 22 H 1.09004 * 109.47368 * 60.00217 * 14 13 9 23 23 H 1.09001 * 109.47372 * 300.00372 * 14 13 9 24 24 H 1.09002 * 109.47398 * 180.02562 * 15 14 13 25 25 H 1.09001 * 109.47194 * 300.00476 * 15 14 13 26 26 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 27 27 H 1.08996 * 109.47853 * 180.02562 * 16 15 14 28 28 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 29 29 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 30 30 H 1.09002 * 109.47045 * 180.02562 * 18 17 16 31 31 H 1.09001 * 109.47375 * 59.99966 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 6 0.3851 -2.5793 1.2302 12 8 -0.8124 -2.6896 1.1198 13 6 2.2454 -3.6621 -0.0005 14 6 3.1250 -3.5810 -1.2498 15 6 4.1188 -4.7442 -1.2502 16 6 3.3534 -6.0689 -1.2505 17 6 2.4737 -6.1500 -0.0013 18 6 1.4799 -4.9868 -0.0009 19 1 -0.4850 0.8400 0.0004 20 1 0.8354 -2.5380 2.2109 21 1 2.8720 -3.6044 0.8894 22 1 3.6700 -2.6370 -1.2498 23 1 2.4983 -3.6387 -2.1398 24 1 4.7458 -4.6862 -2.1400 25 1 4.7455 -4.6870 -0.3602 26 1 2.7267 -6.1263 -2.1404 27 1 4.0613 -6.8977 -1.2504 28 1 3.1004 -6.0928 0.8887 29 1 1.9281 -7.0936 -0.0018 30 1 0.8535 -5.0443 0.8893 31 1 0.8532 -5.0440 -0.8909 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238638923.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:52 Heat of formation + Delta-G solvation = -76.069024 kcal Electronic energy + Delta-G solvation = -12801.939339 eV Core-core repulsion = 10660.884159 eV Total energy + Delta-G solvation = -2141.055180 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.53960 -36.95394 -33.44964 -31.36631 -30.23924 -27.17649 -24.02705 -22.07986 -21.35243 -19.40084 -19.04912 -16.58274 -15.16117 -14.51300 -14.19001 -14.01864 -13.66001 -13.46449 -13.00231 -12.34134 -11.78708 -11.70145 -11.67592 -11.33761 -10.97785 -10.70392 -10.62159 -10.48270 -10.14665 -9.91078 -9.61995 -9.38759 -8.93737 -8.63976 -7.89463 -6.10686 -4.19331 3.24423 3.33295 3.36237 3.70350 4.35682 5.14140 5.21256 5.25020 5.27928 5.73992 5.79621 5.94710 5.99071 6.02631 6.05366 6.15204 6.17945 6.40266 6.52029 6.58277 6.69069 6.74818 6.96152 7.03840 7.07607 7.28661 7.61364 7.84869 8.17611 8.84550 9.08763 9.45932 10.95889 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.040325 B = 0.011975 C = 0.009665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.186292 B = 2337.647114 C = 2896.296081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.068 0.932 9 C -0.009 4.009 10 H 0.048 0.952 11 C 0.374 3.626 12 O -0.494 6.494 13 C -0.068 4.068 14 C -0.103 4.103 15 C -0.120 4.120 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.120 4.120 19 H 0.264 0.736 20 H 0.047 0.953 21 H 0.061 0.939 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.066 -8.151 -0.597 10.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.147 4.147 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.086 0.914 9 C -0.029 4.029 10 H 0.066 0.934 11 C 0.232 3.768 12 O -0.367 6.367 13 C -0.087 4.087 14 C -0.140 4.140 15 C -0.158 4.158 16 C -0.155 4.155 17 C -0.154 4.154 18 C -0.157 4.157 19 H 0.074 0.926 20 H 0.063 0.937 21 H 0.080 0.920 22 H 0.091 0.909 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.256 -8.090 -0.663 10.248 hybrid contribution 0.464 1.121 0.057 1.215 sum 6.720 -6.969 -0.606 9.700 Atomic orbital electron populations 1.70029 1.05807 1.27021 1.48539 1.25184 0.94956 0.99716 0.94814 0.86473 0.80098 0.83486 0.77679 1.19499 1.20924 1.20985 1.20994 0.93065 0.88967 1.52395 0.91353 1.19636 0.94358 0.93776 0.95099 0.93406 1.26074 0.89156 0.66533 0.95008 1.90186 1.19301 1.36655 1.90583 1.21002 0.96599 0.93192 0.97867 1.21466 0.97018 0.97528 0.97994 1.21597 0.98093 0.95259 1.00854 1.21521 0.98354 0.97276 0.98310 1.21524 0.97850 0.98105 0.97926 1.21705 0.97547 0.94994 1.01486 0.92579 0.93653 0.92024 0.90886 0.92721 0.92924 0.92510 0.92363 0.93063 0.92389 0.92952 0.92860 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.77 12.34 55.43 0.68 -25.09 16 2 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -13.40 7.82 -34.44 -0.27 -13.67 16 8 H 0.07 1.70 6.71 -52.48 -0.35 1.35 16 9 C -0.01 -0.23 1.80 -92.92 -0.17 -0.40 16 10 H 0.05 1.31 8.12 -51.93 -0.42 0.89 16 11 C 0.37 9.34 7.95 36.01 0.29 9.63 16 12 O -0.49 -13.80 17.85 6.00 0.11 -13.69 16 13 C -0.07 -1.31 1.73 -90.62 -0.16 -1.47 16 14 C -0.10 -1.82 4.95 -26.73 -0.13 -1.95 16 15 C -0.12 -1.73 5.92 -26.73 -0.16 -1.89 16 16 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 17 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 18 C -0.12 -2.07 4.96 -26.73 -0.13 -2.21 16 19 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 20 H 0.05 1.06 8.06 -52.49 -0.42 0.64 16 21 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 22 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.95 7.21 -51.93 -0.37 0.57 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 251.62 15.07 3.79 3.79 Total: -1.00 -29.57 251.62 -6.43 -36.01 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.85 Total: -2.80 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -1.14 Total: -14.01 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.68 Total: -25.09 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.11 Total: -13.69 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.57 -6.43 -36.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238638923.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.061 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds