Wall clock time and date at job start Mon Mar 30 2020 02:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48500 * 109.46790 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47233 * 300.00164 * 3 2 1 6 6 H 1.48493 * 109.47285 * 60.00557 * 3 2 1 7 7 C 1.37876 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00356 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46665 * 60.00321 * 9 7 2 11 11 C 1.50706 * 109.47294 * 300.00702 * 9 7 2 12 12 O 1.20755 * 120.00374 * 119.99459 * 11 9 7 13 13 C 1.52997 * 109.47342 * 180.02562 * 9 7 2 14 14 C 1.52996 * 109.46975 * 299.99900 * 13 9 7 15 15 C 1.53000 * 109.47328 * 180.02562 * 14 13 9 16 16 C 1.52997 * 109.47060 * 60.00126 * 15 14 13 17 17 C 1.53006 * 109.47127 * 300.00449 * 16 15 14 18 18 C 1.52997 * 109.47164 * 59.99836 * 17 16 15 19 19 H 0.96996 * 119.99885 * 359.97438 * 1 2 3 20 20 H 1.08000 * 119.99302 * 299.99711 * 11 9 7 21 21 H 1.08992 * 109.47280 * 60.00435 * 13 9 7 22 22 H 1.09004 * 109.47368 * 60.00217 * 14 13 9 23 23 H 1.09001 * 109.47372 * 300.00372 * 14 13 9 24 24 H 1.09002 * 109.47398 * 180.02562 * 15 14 13 25 25 H 1.09001 * 109.47194 * 300.00476 * 15 14 13 26 26 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 27 27 H 1.08996 * 109.47853 * 180.02562 * 16 15 14 28 28 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 29 29 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 30 30 H 1.09002 * 109.47045 * 180.02562 * 18 17 16 31 31 H 1.09001 * 109.47375 * 59.99966 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 6 0.3851 -2.5793 1.2302 12 8 -0.8124 -2.6896 1.1198 13 6 2.2454 -3.6621 -0.0005 14 6 3.1250 -3.5810 -1.2498 15 6 4.1188 -4.7442 -1.2502 16 6 3.3534 -6.0689 -1.2505 17 6 2.4737 -6.1500 -0.0013 18 6 1.4799 -4.9868 -0.0009 19 1 -0.4850 0.8400 0.0004 20 1 0.8354 -2.5380 2.2109 21 1 2.8720 -3.6044 0.8894 22 1 3.6700 -2.6370 -1.2498 23 1 2.4983 -3.6387 -2.1398 24 1 4.7458 -4.6862 -2.1400 25 1 4.7455 -4.6870 -0.3602 26 1 2.7267 -6.1263 -2.1404 27 1 4.0613 -6.8977 -1.2504 28 1 3.1004 -6.0928 0.8887 29 1 1.9281 -7.0936 -0.0018 30 1 0.8535 -5.0443 0.8893 31 1 0.8532 -5.0440 -0.8909 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238638923.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:51 Heat of formation + Delta-G solvation = -92.993740 kcal Electronic energy + Delta-G solvation = -12802.673250 eV Core-core repulsion = 10660.884159 eV Total energy + Delta-G solvation = -2141.789090 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.21702 -38.72842 -35.36288 -33.10160 -31.52429 -28.89936 -25.99157 -23.48880 -22.82473 -21.14824 -20.48054 -18.61354 -16.80663 -16.47813 -15.86551 -15.74375 -15.05447 -14.81842 -14.71046 -14.12833 -13.57753 -13.44956 -13.00409 -12.87809 -12.77303 -12.41103 -12.03446 -11.86890 -11.67280 -11.47211 -11.14774 -10.99261 -10.68951 -10.54727 -9.89017 -8.19781 -6.34639 1.40096 1.43118 1.55533 1.68557 2.40218 3.11767 3.88807 3.95185 4.04455 4.12509 4.44990 4.50409 4.72575 4.74990 4.78297 4.79471 4.91867 5.10944 5.21272 5.26448 5.32167 5.38471 5.46687 5.51894 5.57331 5.61376 5.77864 5.85920 6.14562 6.78457 7.06835 7.35431 8.87104 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.040325 B = 0.011975 C = 0.009665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.186292 B = 2337.647114 C = 2896.296081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.253 1.253 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.081 0.919 9 C -0.011 4.011 10 H 0.003 0.997 11 C 0.374 3.626 12 O -0.529 6.529 13 C -0.062 4.062 14 C -0.101 4.101 15 C -0.114 4.114 16 C -0.116 4.116 17 C -0.111 4.111 18 C -0.118 4.118 19 H 0.261 0.739 20 H 0.077 0.923 21 H 0.073 0.927 22 H 0.058 0.942 23 H 0.038 0.962 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.477 -8.992 -0.242 13.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.176 1.176 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.553 4.553 8 H 0.099 0.901 9 C -0.031 4.031 10 H 0.021 0.979 11 C 0.235 3.765 12 O -0.406 6.406 13 C -0.081 4.081 14 C -0.138 4.138 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.148 4.148 18 C -0.156 4.156 19 H 0.070 0.930 20 H 0.093 0.907 21 H 0.092 0.908 22 H 0.076 0.924 23 H 0.057 0.943 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.703 -8.946 -0.307 12.485 hybrid contribution -0.303 1.362 -0.068 1.397 sum 8.400 -7.584 -0.375 11.324 Atomic orbital electron populations 1.70197 1.07732 1.27635 1.50605 1.26070 0.95585 1.03591 0.94620 0.85393 0.79586 0.78867 0.77247 1.17597 1.21256 1.20944 1.21385 0.93723 0.89477 1.50735 0.90097 1.19621 0.94755 0.95704 0.92989 0.97860 1.26475 0.88630 0.64968 0.96406 1.90170 1.20777 1.38484 1.91125 1.20952 0.95802 0.92086 0.99214 1.21416 0.97237 0.98758 0.96430 1.21550 0.97338 0.94004 1.02238 1.21533 0.98601 0.97584 0.97596 1.21502 0.97318 0.96981 0.99016 1.21661 0.98039 0.95616 1.00243 0.92976 0.90689 0.90833 0.92351 0.94305 0.91297 0.91380 0.92843 0.90178 0.91102 0.91270 0.93818 0.93935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.52 12.34 21.45 0.26 -55.26 16 2 C 0.00 0.03 5.30 84.65 0.45 0.48 16 3 Si 0.96 42.59 29.54 68.60 2.03 44.62 16 4 H -0.25 -10.32 7.11 99.48 0.71 -9.62 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.52 -26.68 7.82 25.60 0.20 -26.48 16 8 H 0.08 3.92 6.71 -2.91 -0.02 3.90 16 9 C -0.01 -0.56 1.80 -12.29 -0.02 -0.58 16 10 H 0.00 0.19 8.12 -2.39 -0.02 0.17 16 11 C 0.37 18.94 7.95 71.24 0.57 19.50 16 12 O -0.53 -30.44 17.85 -1.44 -0.03 -30.47 16 13 C -0.06 -2.34 1.73 -10.80 -0.02 -2.36 16 14 C -0.10 -3.47 4.95 30.59 0.15 -3.32 16 15 C -0.11 -2.91 5.92 30.59 0.18 -2.73 16 16 C -0.12 -2.68 5.92 30.60 0.18 -2.50 16 17 C -0.11 -2.78 5.92 30.60 0.18 -2.60 16 18 C -0.12 -3.99 4.96 30.59 0.15 -3.84 16 19 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 20 H 0.08 3.39 8.06 -2.91 -0.02 3.36 16 21 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 22 H 0.06 2.15 6.62 -2.39 -0.02 2.13 16 23 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.04 1.54 7.21 -2.39 -0.02 1.52 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -64.35 251.62 5.37 -58.98 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.08 Total: 6.57 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 2.02 Total: -24.44 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.26 Total: -55.26 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.03 Total: -30.47 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -64.35 5.37 -58.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238638923.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.014 kcal (2) G-P(sol) polarization free energy of solvation -64.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds