Wall clock time and date at job start Mon Mar 30 2020 02:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.09007 * 109.63444 * 54.58707 * 10 9 7 12 12 C 1.53016 * 109.64560 * 293.95220 * 10 9 7 13 13 C 1.50077 * 110.14427 * 289.74746 * 12 10 9 14 14 C 1.29432 * 124.07584 * 342.87192 * 13 12 10 15 15 C 1.50066 * 124.07670 * 0.46480 * 14 13 12 16 16 C 1.53026 * 110.15046 * 342.87382 * 15 14 13 17 17 H 1.09011 * 109.81415 * 289.64869 * 16 15 14 18 18 C 1.52992 * 109.64723 * 169.12245 * 16 15 14 19 19 O 1.42898 * 109.47632 * 66.05051 * 18 16 15 20 20 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 22 22 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 23 23 H 1.08999 * 109.36073 * 49.95514 * 12 10 9 24 24 H 1.08997 * 109.36300 * 169.54155 * 12 10 9 25 25 H 1.08001 * 117.95956 * 162.84651 * 13 12 10 26 26 H 1.07999 * 117.96392 * 180.45058 * 14 13 12 27 27 H 1.09009 * 109.36314 * 222.66497 * 15 14 13 28 28 H 1.09003 * 109.24729 * 103.00824 * 15 14 13 29 29 H 1.08997 * 109.47549 * 186.05917 * 18 16 15 30 30 H 1.09005 * 109.46878 * 306.04999 * 18 16 15 31 31 H 0.96696 * 114.00433 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 1 3.5793 -3.1785 -0.8467 12 6 3.6471 -3.3191 1.3065 13 6 4.4553 -2.7459 2.4337 14 6 5.5386 -2.0563 2.2718 15 6 6.1325 -1.7251 0.9341 16 6 5.5498 -2.6425 -0.1431 17 1 5.9253 -3.6569 -0.0073 18 6 5.9483 -2.1280 -1.5277 19 8 7.3632 -2.2441 -1.6901 20 1 -0.4850 0.8400 -0.0004 21 1 3.8713 -0.6783 -0.8962 22 1 3.8786 -0.6819 0.8837 23 1 2.5870 -3.1625 1.5060 24 1 3.8438 -4.3883 1.2282 25 1 4.1114 -2.9193 3.4427 26 1 6.0467 -1.6968 3.1544 27 1 7.2136 -1.8580 0.9757 28 1 5.9052 -0.6880 0.6869 29 1 5.4450 -2.7182 -2.2935 30 1 5.6560 -1.0823 -1.6246 31 1 7.6875 -1.9352 -2.5471 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238716576.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:08 Heat of formation + Delta-G solvation = -56.930606 kcal Electronic energy + Delta-G solvation = -12844.679346 eV Core-core repulsion = 10704.454070 eV Total energy + Delta-G solvation = -2140.225276 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.98337 -36.14794 -32.95282 -31.50710 -30.56016 -27.80739 -25.16002 -23.07112 -21.33764 -19.78136 -17.40198 -16.62151 -16.26334 -15.53181 -14.54176 -14.13292 -13.70434 -13.43340 -12.93607 -12.54192 -12.37093 -12.00366 -11.62496 -11.21103 -11.15068 -10.86985 -10.43604 -10.10822 -9.77616 -9.61143 -9.36159 -9.31268 -8.95359 -8.49632 -8.35220 -6.01465 -3.97556 2.90149 3.30764 3.39087 3.43659 4.47637 4.51465 5.18655 5.25896 5.33810 5.53874 5.67423 5.87185 5.91041 5.99950 6.12545 6.17425 6.23880 6.32227 6.49461 6.57794 6.80101 6.87208 7.06010 7.20982 7.29955 7.54833 7.56448 7.83125 7.85536 8.57655 9.03871 9.62179 11.12061 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.033063 B = 0.012978 C = 0.011431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.675988 B = 2156.897139 C = 2448.851112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.066 3.934 3 Si 0.874 3.126 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.512 4.512 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.068 4.068 11 H 0.065 0.935 12 C -0.081 4.081 13 C -0.135 4.135 14 C -0.169 4.169 15 C -0.075 4.075 16 C -0.082 4.082 17 H 0.067 0.933 18 C 0.078 3.922 19 O -0.578 6.578 20 H 0.261 0.739 21 H 0.008 0.992 22 H 0.025 0.975 23 H 0.089 0.911 24 H 0.056 0.944 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.472 -3.550 -0.290 12.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.702 3.298 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.550 4.550 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.086 4.086 11 H 0.084 0.916 12 C -0.118 4.118 13 C -0.153 4.153 14 C -0.188 4.188 15 C -0.112 4.112 16 C -0.101 4.101 17 H 0.086 0.914 18 C 0.001 3.999 19 O -0.383 6.383 20 H 0.071 0.929 21 H 0.026 0.974 22 H 0.043 0.957 23 H 0.108 0.892 24 H 0.074 0.926 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 11.262 -3.672 0.335 11.850 hybrid contribution 0.275 1.275 -0.504 1.399 sum 11.537 -2.397 -0.169 11.785 Atomic orbital electron populations 1.69915 1.06240 1.26712 1.51668 1.25001 0.94652 0.98991 0.94819 0.86859 0.80582 0.83993 0.78390 1.20463 1.21490 1.18925 1.21157 0.89552 0.94261 1.50053 0.90932 1.19718 0.96982 0.91685 0.96400 1.21084 0.91177 0.99492 0.96894 0.91646 1.20458 1.00939 0.97395 0.93023 1.22028 0.95481 0.98867 0.98914 1.21892 0.98164 1.01132 0.97563 1.20357 0.98851 0.99715 0.92273 1.21264 0.97092 0.99099 0.92603 0.91408 1.22383 0.80028 1.00058 0.97458 1.86458 1.23372 1.88230 1.40237 0.92878 0.97374 0.95668 0.89240 0.92566 0.88854 0.88963 0.91850 0.91081 0.93733 0.93060 0.78254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.91 13.96 55.43 0.77 -27.13 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.87 21.88 27.46 -169.99 -4.67 17.21 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.26 -6.42 6.55 56.52 0.37 -6.05 16 7 C -0.51 -14.31 8.83 -34.44 -0.30 -14.61 16 8 H 0.07 2.16 7.44 -52.49 -0.39 1.77 16 9 C -0.01 -0.25 2.62 -27.88 -0.07 -0.32 16 10 C -0.07 -1.34 2.11 -90.41 -0.19 -1.53 16 11 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 12 C -0.08 -1.53 5.50 -28.18 -0.15 -1.68 16 13 C -0.13 -2.39 9.34 -35.89 -0.34 -2.73 16 14 C -0.17 -2.91 9.14 -35.90 -0.33 -3.24 16 15 C -0.08 -1.30 4.62 -28.18 -0.13 -1.43 16 16 C -0.08 -1.42 2.27 -90.41 -0.21 -1.62 16 17 H 0.07 1.14 8.13 -51.92 -0.42 0.72 16 18 C 0.08 1.23 6.12 37.15 0.23 1.46 16 19 O -0.58 -8.27 13.44 -35.23 -0.47 -8.74 16 20 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 21 H 0.01 0.19 6.02 -51.93 -0.31 -0.12 16 22 H 0.03 0.61 4.95 -51.93 -0.26 0.35 16 23 H 0.09 1.87 6.81 -51.93 -0.35 1.52 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.09 1.50 8.06 -52.49 -0.42 1.08 16 26 H 0.09 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.06 1.02 8.12 -51.92 -0.42 0.60 16 28 H 0.07 1.31 6.96 -51.93 -0.36 0.95 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.84 6.77 -51.93 -0.35 0.49 16 31 H 0.37 3.50 9.12 45.56 0.42 3.91 16 LS Contribution 244.80 15.07 3.69 3.69 Total: -1.00 -31.01 244.80 -6.01 -37.01 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -3.74 Total: 1.84 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -1.59 Total: -23.89 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 0.77 Total: -27.13 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.47 Total: -8.74 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.01 -6.01 -37.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238716576.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.916 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds