Wall clock time and date at job start Mon Mar 30 2020 02:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.09007 * 109.63444 * 54.58707 * 10 9 7 12 12 C 1.53016 * 109.64560 * 293.95220 * 10 9 7 13 13 C 1.50077 * 110.14427 * 289.74746 * 12 10 9 14 14 C 1.29432 * 124.07584 * 342.87192 * 13 12 10 15 15 C 1.50066 * 124.07670 * 0.46480 * 14 13 12 16 16 C 1.53026 * 110.15046 * 342.87382 * 15 14 13 17 17 H 1.09011 * 109.81415 * 289.64869 * 16 15 14 18 18 C 1.52992 * 109.64723 * 169.12245 * 16 15 14 19 19 O 1.42898 * 109.47632 * 66.05051 * 18 16 15 20 20 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 22 22 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 23 23 H 1.08999 * 109.36073 * 49.95514 * 12 10 9 24 24 H 1.08997 * 109.36300 * 169.54155 * 12 10 9 25 25 H 1.08001 * 117.95956 * 162.84651 * 13 12 10 26 26 H 1.07999 * 117.96392 * 180.45058 * 14 13 12 27 27 H 1.09009 * 109.36314 * 222.66497 * 15 14 13 28 28 H 1.09003 * 109.24729 * 103.00824 * 15 14 13 29 29 H 1.08997 * 109.47549 * 186.05917 * 18 16 15 30 30 H 1.09005 * 109.46878 * 306.04999 * 18 16 15 31 31 H 0.96696 * 114.00433 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 1 3.5793 -3.1785 -0.8467 12 6 3.6471 -3.3191 1.3065 13 6 4.4553 -2.7459 2.4337 14 6 5.5386 -2.0563 2.2718 15 6 6.1325 -1.7251 0.9341 16 6 5.5498 -2.6425 -0.1431 17 1 5.9253 -3.6569 -0.0073 18 6 5.9483 -2.1280 -1.5277 19 8 7.3632 -2.2441 -1.6901 20 1 -0.4850 0.8400 -0.0004 21 1 3.8713 -0.6783 -0.8962 22 1 3.8786 -0.6819 0.8837 23 1 2.5870 -3.1625 1.5060 24 1 3.8438 -4.3883 1.2282 25 1 4.1114 -2.9193 3.4427 26 1 6.0467 -1.6968 3.1544 27 1 7.2136 -1.8580 0.9757 28 1 5.9052 -0.6880 0.6869 29 1 5.4450 -2.7182 -2.2935 30 1 5.6560 -1.0823 -1.6246 31 1 7.6875 -1.9352 -2.5471 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238716576.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:07 Heat of formation + Delta-G solvation = -78.251798 kcal Electronic energy + Delta-G solvation = -12845.603902 eV Core-core repulsion = 10704.454070 eV Total energy + Delta-G solvation = -2141.149832 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.42279 -37.31877 -34.99704 -33.08963 -32.06980 -29.61673 -26.50329 -24.90173 -22.90023 -21.25188 -19.11522 -18.24287 -17.70627 -16.97090 -16.17724 -15.70521 -15.25980 -14.94831 -14.61224 -14.26276 -13.87210 -13.54304 -13.07282 -12.99562 -12.76299 -12.40256 -12.14843 -11.81203 -11.65484 -11.07243 -10.97738 -10.89740 -10.69539 -10.60888 -9.73216 -8.24991 -6.25475 1.33352 1.36393 1.47615 1.54378 2.37529 3.10879 3.38276 3.83712 3.91448 4.20019 4.40026 4.47726 4.49597 4.59836 4.71709 4.83698 4.85049 4.91567 5.03988 5.17673 5.19383 5.34029 5.43973 5.57333 5.60844 5.75029 5.93999 6.19714 6.35792 6.81615 6.95039 7.37474 8.91783 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.033063 B = 0.012978 C = 0.011431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.675988 B = 2156.897139 C = 2448.851112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.004 3.996 3 Si 0.939 3.061 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.249 1.249 7 C -0.514 4.514 8 H 0.036 0.964 9 C -0.002 4.002 10 C -0.067 4.067 11 H 0.058 0.942 12 C -0.081 4.081 13 C -0.153 4.153 14 C -0.168 4.168 15 C -0.076 4.076 16 C -0.078 4.078 17 H 0.076 0.924 18 C 0.082 3.918 19 O -0.585 6.585 20 H 0.263 0.737 21 H 0.014 0.986 22 H 0.022 0.978 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.115 0.885 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.909 -3.057 -0.292 14.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.192 4.192 3 Si 0.763 3.237 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.173 1.173 7 C -0.552 4.552 8 H 0.055 0.945 9 C -0.039 4.039 10 C -0.086 4.086 11 H 0.077 0.923 12 C -0.118 4.118 13 C -0.171 4.171 14 C -0.186 4.186 15 C -0.113 4.113 16 C -0.096 4.096 17 H 0.095 0.905 18 C 0.005 3.995 19 O -0.393 6.393 20 H 0.072 0.928 21 H 0.032 0.968 22 H 0.040 0.960 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.125 0.875 26 H 0.133 0.867 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 13.727 -3.189 0.314 14.096 hybrid contribution -0.499 1.035 -0.524 1.263 sum 13.228 -2.154 -0.210 13.404 Atomic orbital electron populations 1.70068 1.08136 1.27761 1.53582 1.25906 0.95454 1.03064 0.94760 0.85820 0.79643 0.79115 0.79119 1.19160 1.21365 1.17281 1.21485 0.92040 0.92867 1.48782 0.94529 1.19607 0.93722 0.94347 0.96233 1.21000 0.93354 0.97000 0.97243 0.92345 1.20394 0.99226 0.98939 0.93228 1.22124 0.95949 0.99852 0.99134 1.22149 0.97850 1.00101 0.98478 1.20386 0.99842 0.98892 0.92159 1.21175 0.94675 0.99877 0.93880 0.90519 1.22205 0.81095 0.99539 0.96673 1.86395 1.22165 1.88431 1.42264 0.92806 0.96802 0.95982 0.92502 0.90400 0.87488 0.86724 0.90223 0.92159 0.93015 0.93862 0.75654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 2 C 0.00 0.24 5.47 84.65 0.46 0.71 16 3 Si 0.94 44.72 27.46 68.60 1.88 46.61 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 6 H -0.25 -11.15 6.55 99.48 0.65 -10.50 16 7 C -0.51 -29.22 8.83 25.60 0.23 -29.00 16 8 H 0.04 2.28 7.44 -2.91 -0.02 2.26 16 9 C 0.00 -0.09 2.62 29.85 0.08 -0.01 16 10 C -0.07 -2.60 2.11 -10.66 -0.02 -2.62 16 11 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 12 C -0.08 -3.00 5.50 29.66 0.16 -2.84 16 13 C -0.15 -5.15 9.34 27.05 0.25 -4.90 16 14 C -0.17 -5.31 9.14 27.05 0.25 -5.06 16 15 C -0.08 -2.40 4.62 29.66 0.14 -2.26 16 16 C -0.08 -2.50 2.27 -10.66 -0.02 -2.52 16 17 H 0.08 2.36 8.13 -2.38 -0.02 2.34 16 18 C 0.08 2.38 6.12 71.98 0.44 2.83 16 19 O -0.58 -14.73 13.44 -148.98 -2.00 -16.73 16 20 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 21 H 0.01 0.62 6.02 -2.39 -0.01 0.61 16 22 H 0.02 1.03 4.95 -2.38 -0.01 1.02 16 23 H 0.06 2.45 6.81 -2.39 -0.02 2.44 16 24 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 25 H 0.11 3.27 8.06 -2.91 -0.02 3.24 16 26 H 0.11 3.10 8.06 -2.91 -0.02 3.07 16 27 H 0.08 2.27 8.12 -2.38 -0.02 2.25 16 28 H 0.06 2.05 6.96 -2.39 -0.02 2.04 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.32 6.77 -2.38 -0.02 1.30 16 31 H 0.39 6.05 9.12 -74.06 -0.68 5.37 16 Total: -1.00 -66.07 244.80 2.52 -63.55 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.38 Total: 12.12 kcal Atomic # 6 Polarization: -47.64 SS G_CDS: 1.96 Total: -45.68 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.30 Total: -59.87 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -2.00 Total: -16.73 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Total: -66.07 2.52 -63.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238716576.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.705 kcal (2) G-P(sol) polarization free energy of solvation -66.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds