Wall clock time and date at job start Mon Mar 30 2020 02:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.41313 * 2 1 4 4 C 1.52953 * 109.41857 * 119.86353 * 2 1 3 5 5 C 1.53236 * 109.41342 * 56.49854 * 4 2 1 6 6 C 1.51297 * 108.52121 * 54.62597 * 5 4 2 7 7 O 1.20757 * 120.84787 * 128.63300 * 6 5 4 8 8 C 1.51268 * 118.30526 * 308.65786 * 6 5 4 9 9 H 1.09000 * 109.78831 * 291.53997 * 8 6 5 10 10 C 1.50702 * 109.62697 * 171.06174 * 8 6 5 11 11 H 1.08006 * 119.99837 * 240.95836 * 10 8 6 12 12 C 1.37879 * 119.99868 * 60.95280 * 10 8 6 13 13 N 1.31509 * 120.00061 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99897 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47397 * 60.00014 * 14 12 10 16 16 H 1.48495 * 109.47114 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47091 * 299.99975 * 14 12 10 18 18 C 1.52963 * 109.41219 * 240.21963 * 2 1 3 19 19 H 1.09000 * 109.46841 * 300.13337 * 1 2 3 20 20 H 1.09002 * 109.47386 * 60.13869 * 1 2 3 21 21 H 1.09006 * 109.46755 * 180.13885 * 1 2 3 22 22 H 1.09001 * 109.47100 * 179.85963 * 3 2 1 23 23 H 1.09003 * 109.47207 * 299.86739 * 3 2 1 24 24 H 1.09000 * 109.46840 * 59.86199 * 3 2 1 25 25 H 1.09002 * 109.48451 * 176.48800 * 4 2 1 26 26 H 1.08999 * 109.48225 * 296.51689 * 4 2 1 27 27 H 1.08998 * 109.62088 * 174.34907 * 5 4 2 28 28 H 1.08992 * 109.62559 * 294.92227 * 5 4 2 29 29 H 0.97001 * 120.00557 * 179.97438 * 13 12 10 30 30 H 1.08994 * 109.48627 * 63.46644 * 18 2 1 31 31 H 1.08995 * 109.48314 * 183.51287 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0386 1.4431 0.0000 4 6 2.0385 -0.7183 1.2510 5 6 1.4555 -2.1346 1.2975 6 6 1.7885 -2.8343 -0.0020 7 8 2.3074 -3.9247 -0.0029 8 6 1.4554 -2.1328 -1.3002 9 1 0.3737 -2.0795 -1.4238 10 6 2.0599 -2.8901 -2.4544 11 1 2.7882 -2.4113 -3.0922 12 6 1.6834 -4.1943 -2.6960 13 7 0.7963 -4.7772 -1.9195 14 14 2.4332 -5.1332 -4.1262 15 1 3.9055 -5.2119 -3.9492 16 1 1.8655 -6.5047 -4.1700 17 1 2.1243 -4.4294 -5.3968 18 6 2.0384 -0.7165 -1.2521 19 1 -0.3633 0.5159 0.8888 20 1 -0.3634 0.5117 -0.8912 21 1 -0.3633 -1.0277 0.0025 22 1 3.1286 1.4442 0.0025 23 1 1.6766 1.9559 -0.8912 24 1 1.6726 1.9572 0.8888 25 1 3.1267 -0.7738 1.2213 26 1 1.7267 -0.1676 2.1384 27 1 1.8929 -2.6833 2.1316 28 1 0.3736 -2.0814 1.4178 29 1 0.5311 -5.6946 -2.0897 30 1 1.7263 -0.1647 -2.1388 31 1 3.1265 -0.7722 -1.2226 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259590230.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:32 Heat of formation + Delta-G solvation = -61.272900 kcal Electronic energy + Delta-G solvation = -13141.542313 eV Core-core repulsion = 11001.128741 eV Total energy + Delta-G solvation = -2140.413572 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.12091 -36.36323 -32.84853 -30.56331 -30.03609 -26.88991 -24.98447 -24.15784 -21.54954 -19.30053 -17.10337 -16.24816 -14.78933 -14.35539 -14.30932 -13.89150 -13.65071 -13.36524 -12.69287 -12.16815 -11.77813 -11.55647 -11.40061 -11.09984 -11.01155 -10.89353 -10.64828 -10.54313 -10.26658 -9.98301 -9.79937 -9.22853 -9.00919 -8.29345 -7.70745 -5.93070 -3.95487 3.39756 3.44165 3.46547 3.72822 4.53187 5.20458 5.26021 5.34530 5.38357 5.66155 5.84706 5.90258 6.02598 6.06760 6.12971 6.18696 6.25848 6.36836 6.46024 6.54339 6.64326 6.69806 6.81974 6.90776 6.95699 7.44988 7.64338 7.99064 8.36995 9.00256 9.38450 9.70811 11.18680 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.051111 B = 0.012326 C = 0.011158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.700133 B = 2271.106954 C = 2508.837398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.073 4.073 3 C -0.137 4.137 4 C -0.094 4.094 5 C -0.180 4.180 6 C 0.358 3.642 7 O -0.431 6.431 8 C 0.008 3.992 9 H 0.058 0.942 10 C -0.527 4.527 11 H 0.056 0.944 12 C 0.080 3.920 13 N -0.875 5.875 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.090 4.090 19 H 0.043 0.957 20 H 0.051 0.949 21 H 0.066 0.934 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.260 0.740 30 H 0.056 0.944 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.293 9.492 4.587 10.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.195 4.195 4 C -0.132 4.132 5 C -0.218 4.218 6 C 0.229 3.771 7 O -0.301 6.301 8 C -0.011 4.011 9 H 0.076 0.924 10 C -0.565 4.565 11 H 0.075 0.925 12 C -0.125 4.125 13 N -0.511 5.511 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.128 4.128 19 H 0.063 0.937 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.110 8.715 4.618 9.863 hybrid contribution 0.271 -0.554 -0.620 0.875 sum 0.162 8.161 3.998 9.089 Atomic orbital electron populations 1.21951 0.94930 1.02516 1.00511 1.20647 0.95794 0.94557 0.96276 1.21850 1.00658 0.95996 1.00962 1.21454 1.00097 0.94493 0.97119 1.22528 1.02205 0.97231 0.99822 1.25243 0.74422 0.86099 0.91298 1.90222 1.31213 1.19492 1.89183 1.19367 0.98294 0.90786 0.92660 0.92445 1.20784 1.25599 0.97760 1.12343 0.92533 1.24865 0.94453 0.97378 0.95772 1.69887 1.30993 1.12942 1.37281 0.86659 0.79735 0.78938 0.82585 1.20286 1.21408 1.20402 1.21608 0.99726 0.96503 0.94972 0.93743 0.92975 0.91467 0.93057 0.92883 0.93396 0.92271 0.92459 0.91624 0.89881 0.93046 0.92488 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 7.58 37.16 0.28 -1.89 16 2 C -0.07 -1.17 0.76 -154.55 -0.12 -1.29 16 3 C -0.14 -1.82 8.46 37.16 0.31 -1.50 16 4 C -0.09 -1.51 4.78 -26.63 -0.13 -1.63 16 5 C -0.18 -3.42 5.65 -27.47 -0.16 -3.57 16 6 C 0.36 8.88 6.09 -28.46 -0.17 8.70 16 7 O -0.43 -12.58 14.97 6.00 0.09 -12.49 16 8 C 0.01 0.19 1.84 -92.52 -0.17 0.02 16 9 H 0.06 1.48 6.69 -51.93 -0.35 1.14 16 10 C -0.53 -14.92 8.28 -34.44 -0.29 -15.20 16 11 H 0.06 1.57 7.75 -52.48 -0.41 1.16 16 12 C 0.08 2.32 4.74 -17.82 -0.08 2.24 16 13 N -0.87 -26.48 11.49 55.43 0.64 -25.84 16 14 Si 0.89 22.46 29.54 -169.99 -5.02 17.43 16 15 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 C -0.09 -1.79 4.01 -26.63 -0.11 -1.90 16 19 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 20 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.07 1.16 4.92 -51.93 -0.26 0.90 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.08 1.48 6.67 -51.93 -0.35 1.13 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 245.27 15.07 3.70 3.70 Total: -1.00 -31.37 245.27 -5.94 -37.31 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -4.72 Total: -4.07 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -0.62 Total: -16.04 kcal Atomic # 7 Polarization: -26.48 SS G_CDS: 0.64 Total: -25.84 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.09 Total: -12.49 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.37 -5.94 -37.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259590230.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.960 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds