Wall clock time and date at job start Mon Mar 30 2020 02:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.41313 * 2 1 4 4 C 1.52953 * 109.41857 * 119.86353 * 2 1 3 5 5 C 1.53236 * 109.41342 * 56.49854 * 4 2 1 6 6 C 1.51297 * 108.52121 * 54.62597 * 5 4 2 7 7 O 1.20757 * 120.84787 * 128.63300 * 6 5 4 8 8 C 1.51268 * 118.30526 * 308.65786 * 6 5 4 9 9 H 1.09000 * 109.78831 * 291.53997 * 8 6 5 10 10 C 1.50702 * 109.62697 * 171.06174 * 8 6 5 11 11 H 1.08006 * 119.99837 * 240.95836 * 10 8 6 12 12 C 1.37879 * 119.99868 * 60.95280 * 10 8 6 13 13 N 1.31509 * 120.00061 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99897 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47397 * 60.00014 * 14 12 10 16 16 H 1.48495 * 109.47114 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47091 * 299.99975 * 14 12 10 18 18 C 1.52963 * 109.41219 * 240.21963 * 2 1 3 19 19 H 1.09000 * 109.46841 * 300.13337 * 1 2 3 20 20 H 1.09002 * 109.47386 * 60.13869 * 1 2 3 21 21 H 1.09006 * 109.46755 * 180.13885 * 1 2 3 22 22 H 1.09001 * 109.47100 * 179.85963 * 3 2 1 23 23 H 1.09003 * 109.47207 * 299.86739 * 3 2 1 24 24 H 1.09000 * 109.46840 * 59.86199 * 3 2 1 25 25 H 1.09002 * 109.48451 * 176.48800 * 4 2 1 26 26 H 1.08999 * 109.48225 * 296.51689 * 4 2 1 27 27 H 1.08998 * 109.62088 * 174.34907 * 5 4 2 28 28 H 1.08992 * 109.62559 * 294.92227 * 5 4 2 29 29 H 0.97001 * 120.00557 * 179.97438 * 13 12 10 30 30 H 1.08994 * 109.48627 * 63.46644 * 18 2 1 31 31 H 1.08995 * 109.48314 * 183.51287 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0386 1.4431 0.0000 4 6 2.0385 -0.7183 1.2510 5 6 1.4555 -2.1346 1.2975 6 6 1.7885 -2.8343 -0.0020 7 8 2.3074 -3.9247 -0.0029 8 6 1.4554 -2.1328 -1.3002 9 1 0.3737 -2.0795 -1.4238 10 6 2.0599 -2.8901 -2.4544 11 1 2.7882 -2.4113 -3.0922 12 6 1.6834 -4.1943 -2.6960 13 7 0.7963 -4.7772 -1.9195 14 14 2.4332 -5.1332 -4.1262 15 1 3.9055 -5.2119 -3.9492 16 1 1.8655 -6.5047 -4.1700 17 1 2.1243 -4.4294 -5.3968 18 6 2.0384 -0.7165 -1.2521 19 1 -0.3633 0.5159 0.8888 20 1 -0.3634 0.5117 -0.8912 21 1 -0.3633 -1.0277 0.0025 22 1 3.1286 1.4442 0.0025 23 1 1.6766 1.9559 -0.8912 24 1 1.6726 1.9572 0.8888 25 1 3.1267 -0.7738 1.2213 26 1 1.7267 -0.1676 2.1384 27 1 1.8929 -2.6833 2.1316 28 1 0.3736 -2.0814 1.4178 29 1 0.5311 -5.6946 -2.0897 30 1 1.7263 -0.1647 -2.1388 31 1 3.1265 -0.7722 -1.2226 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259590230.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:32 Heat of formation + Delta-G solvation = -80.484312 kcal Electronic energy + Delta-G solvation = -13142.375382 eV Core-core repulsion = 11001.128741 eV Total energy + Delta-G solvation = -2141.246641 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.78557 -38.11454 -34.94773 -32.02266 -31.91411 -28.05761 -26.90207 -25.67059 -23.30416 -20.97035 -18.67785 -18.33888 -16.72992 -16.08121 -15.97405 -15.51713 -15.27349 -14.83545 -14.35749 -13.99472 -13.15335 -13.07446 -12.92044 -12.77032 -12.64220 -12.44548 -12.36806 -12.28625 -11.90255 -11.57279 -11.17929 -11.05830 -10.78161 -10.48446 -9.62136 -8.13656 -6.21132 1.35877 1.39923 1.45664 1.80155 2.42897 3.20690 3.82664 3.91862 4.06009 4.09730 4.48920 4.51813 4.66286 4.80331 4.81403 4.97468 5.04620 5.06388 5.12215 5.18963 5.23122 5.31521 5.42821 5.49833 5.57830 5.64879 5.81627 5.84174 6.27080 6.82414 7.44054 7.49655 8.96829 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.051111 B = 0.012326 C = 0.011158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.700133 B = 2271.106954 C = 2508.837398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.070 4.070 3 C -0.131 4.131 4 C -0.090 4.090 5 C -0.169 4.169 6 C 0.349 3.651 7 O -0.487 6.487 8 C -0.003 4.003 9 H 0.042 0.958 10 C -0.547 4.547 11 H 0.052 0.948 12 C 0.026 3.974 13 N -0.906 5.906 14 Si 0.950 3.050 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.262 1.262 18 C -0.083 4.083 19 H 0.075 0.925 20 H 0.054 0.946 21 H 0.040 0.960 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.256 0.744 30 H 0.059 0.941 31 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.246 11.548 5.387 12.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 C -0.188 4.188 4 C -0.127 4.127 5 C -0.207 4.207 6 C 0.225 3.775 7 O -0.361 6.361 8 C -0.022 4.022 9 H 0.060 0.940 10 C -0.584 4.584 11 H 0.071 0.929 12 C -0.175 4.175 13 N -0.543 5.543 14 Si 0.775 3.225 15 H -0.204 1.204 16 H -0.212 1.212 17 H -0.187 1.187 18 C -0.121 4.121 19 H 0.094 0.906 20 H 0.073 0.927 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.091 0.909 28 H 0.116 0.884 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.068 10.811 5.410 12.089 hybrid contribution 0.243 -1.162 -0.886 1.482 sum 0.176 9.648 4.524 10.658 Atomic orbital electron populations 1.21929 0.94254 1.01327 1.02251 1.20630 0.96308 0.96048 0.93986 1.21787 1.00872 0.93624 1.02566 1.21510 0.99866 0.92524 0.98795 1.22427 1.03395 0.98657 0.96233 1.25828 0.72630 0.85254 0.93811 1.90193 1.33969 1.21699 1.90255 1.19414 0.97248 0.93447 0.92050 0.94027 1.21281 1.25285 0.98348 1.13522 0.92926 1.25663 0.95036 0.98539 0.98280 1.70011 1.32494 1.12876 1.38936 0.85750 0.78619 0.77793 0.80296 1.20420 1.21175 1.18672 1.21527 0.98851 0.94022 0.97687 0.90616 0.92690 0.94095 0.92780 0.92377 0.90765 0.92463 0.88356 0.90934 0.88355 0.93522 0.92277 0.93943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 7.58 71.98 0.55 -3.35 16 2 C -0.07 -2.03 0.76 -52.21 -0.04 -2.07 16 3 C -0.13 -2.91 8.46 71.98 0.61 -2.30 16 4 C -0.09 -2.56 4.78 30.66 0.15 -2.41 16 5 C -0.17 -6.16 5.65 30.12 0.17 -5.99 16 6 C 0.35 17.53 6.09 29.47 0.18 17.71 16 7 O -0.49 -29.29 14.97 -1.44 -0.02 -29.32 16 8 C 0.00 -0.14 1.84 -12.03 -0.02 -0.17 16 9 H 0.04 2.22 6.69 -2.39 -0.02 2.20 16 10 C -0.55 -31.66 8.28 25.60 0.21 -31.45 16 11 H 0.05 2.98 7.75 -2.91 -0.02 2.96 16 12 C 0.03 1.53 4.74 84.66 0.40 1.93 16 13 N -0.91 -56.48 11.49 21.45 0.25 -56.24 16 14 Si 0.95 46.90 29.54 68.60 2.03 48.92 16 15 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 16 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 17 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 18 C -0.08 -3.23 4.01 30.66 0.12 -3.11 16 19 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 20 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 21 H 0.04 1.34 4.92 -2.38 -0.01 1.33 16 22 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.10 3.31 6.67 -2.39 -0.02 3.29 16 29 H 0.26 15.44 8.31 -92.71 -0.77 14.66 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -69.78 245.27 5.67 -64.11 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 1.09 Total: 3.74 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 2.33 Total: -31.21 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.25 Total: -56.24 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.02 Total: -29.32 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -69.78 5.67 -64.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259590230.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.375 kcal (2) G-P(sol) polarization free energy of solvation -69.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds