Wall clock time and date at job start Mon Mar 30 2020 01:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40067 * 126.02334 * 2 1 4 4 C 1.31229 * 108.38021 * 180.29290 * 3 2 1 5 5 N 1.39955 * 125.85866 * 179.74803 * 4 3 2 6 6 C 1.40300 * 108.28463 * 359.74871 * 4 3 2 7 7 C 1.50702 * 126.10039 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.46985 * 269.99677 * 7 6 4 9 9 H 1.07997 * 119.99999 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99902 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00233 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00112 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47117 * 90.00283 * 12 10 8 14 14 H 1.48503 * 109.47230 * 210.00588 * 12 10 8 15 15 H 1.48499 * 109.47041 * 330.00543 * 12 10 8 16 16 C 1.35814 * 126.02976 * 179.85374 * 2 1 3 17 17 N 1.39178 * 126.20898 * 359.97438 * 16 2 1 18 18 H 1.08998 * 109.47262 * 270.14493 * 1 2 3 19 19 H 1.08999 * 109.47352 * 30.15220 * 1 2 3 20 20 H 1.09007 * 109.46956 * 150.15208 * 1 2 3 21 21 H 0.96994 * 119.99714 * 180.02562 * 5 4 3 22 22 H 0.96998 * 119.99640 * 359.97438 * 5 4 3 23 23 H 1.08993 * 109.46889 * 30.00028 * 7 6 4 24 24 H 1.09000 * 109.46770 * 150.00031 * 7 6 4 25 25 H 0.97003 * 120.00105 * 179.97438 * 11 10 8 26 26 H 0.97001 * 120.00549 * 179.69618 * 17 16 2 27 27 H 0.97005 * 119.99725 * 359.41324 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2887 1.1328 0.0000 4 6 3.5393 0.7351 -0.0064 5 7 4.6643 1.5676 -0.0135 6 6 3.5550 -0.6678 -0.0048 7 6 4.7825 -1.5420 -0.0110 8 6 5.1832 -1.8352 -1.4339 9 1 4.6069 -1.4287 -2.2519 10 6 6.2861 -2.6214 -1.6915 11 7 6.9882 -3.1160 -0.6954 12 14 6.7833 -2.9842 -3.4552 13 1 7.7269 -1.9397 -3.9283 14 1 7.4427 -4.3132 -3.5202 15 1 5.5754 -2.9881 -4.3191 16 6 2.2638 -1.0983 0.0028 17 7 1.8393 -2.4238 0.0067 18 1 -0.3634 0.0026 1.0276 19 1 -0.3634 0.8886 -0.5162 20 1 -0.3633 -0.8914 -0.5115 21 1 5.5538 1.1807 -0.0183 22 1 4.5545 2.5313 -0.0144 23 1 5.5977 -1.0273 0.4974 24 1 4.5651 -2.4771 0.5052 25 1 7.7640 -3.6695 -0.8766 26 1 2.4912 -3.1420 0.0040 27 1 0.8913 -2.6294 0.0162 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259907916.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:59 Heat of formation + Delta-G solvation = 75.300542 kcal Electronic energy + Delta-G solvation = -12286.810159 eV Core-core repulsion = 10081.071264 eV Total energy + Delta-G solvation = -2205.738895 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.17074 -34.64547 -33.70185 -32.48350 -30.93357 -29.24669 -26.37838 -24.90103 -22.36212 -19.84861 -19.14469 -16.83129 -16.12921 -15.89473 -15.09924 -14.76508 -14.40390 -14.24678 -13.14486 -12.62882 -12.50470 -12.09268 -11.55741 -11.13625 -10.79287 -10.68201 -10.51730 -9.83281 -9.36616 -9.16332 -9.11147 -8.28826 -6.95040 -6.57209 -5.85900 -3.91531 3.02715 3.14575 3.36195 3.42608 3.47122 4.11795 4.32701 4.56648 4.90799 5.16235 5.43068 5.50039 5.67073 6.26491 6.45865 6.80343 7.29432 7.45201 7.77155 7.93013 7.97121 8.08152 8.36732 8.43245 8.52314 8.60257 9.11782 9.15671 9.72054 11.18897 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.042078 B = 0.010932 C = 0.009898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.269768 B = 2560.567852 C = 2828.209677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.421 5.421 3 N -0.390 5.390 4 C 0.366 3.634 5 N -0.844 5.844 6 C -0.293 4.293 7 C 0.105 3.895 8 C -0.499 4.499 9 H 0.051 0.949 10 C 0.054 3.946 11 N -0.899 5.899 12 Si 0.887 3.113 13 H -0.282 1.282 14 H -0.289 1.289 15 H -0.276 1.276 16 C 0.362 3.638 17 N -0.856 5.856 18 H 0.056 0.944 19 H 0.078 0.922 20 H 0.069 0.931 21 H 0.412 0.588 22 H 0.391 0.609 23 H 0.018 0.982 24 H 0.014 0.986 25 H 0.258 0.742 26 H 0.419 0.581 27 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.504 3.254 1.671 10.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.213 5.213 3 N -0.224 5.224 4 C 0.107 3.893 5 N -0.395 5.395 6 C -0.311 4.311 7 C 0.067 3.933 8 C -0.538 4.538 9 H 0.070 0.930 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.716 3.284 13 H -0.208 1.208 14 H -0.215 1.215 15 H -0.202 1.202 16 C 0.139 3.861 17 N -0.406 5.406 18 H 0.074 0.926 19 H 0.097 0.903 20 H 0.087 0.913 21 H 0.243 0.757 22 H 0.218 0.782 23 H 0.036 0.964 24 H 0.032 0.968 25 H 0.068 0.932 26 H 0.252 0.748 27 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -10.285 4.107 1.705 11.205 hybrid contribution 0.909 -1.120 -1.081 1.803 sum -9.376 2.987 0.623 9.860 Atomic orbital electron populations 1.21372 0.76331 1.02892 1.01520 1.47570 1.04447 1.02037 1.67221 1.77222 0.99282 1.04835 1.41105 1.18796 0.87279 0.89716 0.93544 1.41291 1.04656 1.06519 1.87057 1.19558 0.94061 0.92382 1.25103 1.17316 0.87917 0.92042 0.96069 1.21306 1.10480 1.29347 0.92622 0.93025 1.25016 0.96654 0.96310 0.96572 1.69961 1.18511 1.35044 1.30422 0.86671 0.78573 0.77431 0.85749 1.20832 1.21451 1.20156 1.17647 0.89521 0.81177 0.97746 1.41450 1.09333 1.02663 1.87196 0.92595 0.90307 0.91277 0.75660 0.78246 0.96415 0.96771 0.93202 0.74848 0.78675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.59 11.29 59.85 0.68 2.27 15 2 N -0.42 -8.00 4.04 -67.12 -0.27 -8.27 15 3 N -0.39 -8.32 12.58 31.38 0.39 -7.92 15 4 C 0.37 8.10 8.40 -154.63 -1.30 6.80 15 5 N -0.84 -15.77 9.15 31.36 0.29 -15.48 15 6 C -0.29 -6.87 5.33 -104.61 -0.56 -7.43 15 7 C 0.10 2.74 5.11 -29.03 -0.15 2.59 15 8 C -0.50 -14.06 9.09 -34.44 -0.31 -14.37 15 9 H 0.05 1.50 7.74 -52.49 -0.41 1.10 15 10 C 0.05 1.54 5.46 -17.82 -0.10 1.44 15 11 N -0.90 -26.47 13.29 55.43 0.74 -25.74 15 12 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 15 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 16 C 0.36 7.41 7.95 -152.95 -1.22 6.20 15 17 N -0.86 -14.13 9.10 31.19 0.28 -13.85 15 18 H 0.06 0.64 8.14 -51.93 -0.42 0.22 15 19 H 0.08 0.96 8.14 -51.93 -0.42 0.53 15 20 H 0.07 0.73 7.52 -51.93 -0.39 0.34 15 21 H 0.41 7.70 8.32 -40.82 -0.34 7.36 15 22 H 0.39 6.10 8.96 -40.82 -0.37 5.73 15 23 H 0.02 0.48 7.68 -51.93 -0.40 0.09 15 24 H 0.01 0.38 7.60 -51.93 -0.39 -0.01 15 25 H 0.26 7.23 8.31 -40.82 -0.34 6.90 15 26 H 0.42 7.21 8.19 -40.82 -0.33 6.88 15 27 H 0.39 4.84 8.11 -40.82 -0.33 4.51 15 LS Contribution 240.35 15.07 3.62 3.62 Total: -1.00 -33.30 240.35 -5.86 -39.17 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -2.94 Total: 14.22 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -2.96 Total: -2.51 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: 1.43 Total: -71.26 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -33.30 -5.86 -39.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259907916.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.470 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds