Wall clock time and date at job start Mon Mar 30 2020 01:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40067 * 126.02334 * 2 1 4 4 C 1.31229 * 108.38021 * 180.29290 * 3 2 1 5 5 N 1.39955 * 125.85866 * 179.74803 * 4 3 2 6 6 C 1.40300 * 108.28463 * 359.74871 * 4 3 2 7 7 C 1.50702 * 126.10039 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.46985 * 269.99677 * 7 6 4 9 9 H 1.07997 * 119.99999 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99902 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00233 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00112 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47117 * 90.00283 * 12 10 8 14 14 H 1.48503 * 109.47230 * 210.00588 * 12 10 8 15 15 H 1.48499 * 109.47041 * 330.00543 * 12 10 8 16 16 C 1.35814 * 126.02976 * 179.85374 * 2 1 3 17 17 N 1.39178 * 126.20898 * 359.97438 * 16 2 1 18 18 H 1.08998 * 109.47262 * 270.14493 * 1 2 3 19 19 H 1.08999 * 109.47352 * 30.15220 * 1 2 3 20 20 H 1.09007 * 109.46956 * 150.15208 * 1 2 3 21 21 H 0.96994 * 119.99714 * 180.02562 * 5 4 3 22 22 H 0.96998 * 119.99640 * 359.97438 * 5 4 3 23 23 H 1.08993 * 109.46889 * 30.00028 * 7 6 4 24 24 H 1.09000 * 109.46770 * 150.00031 * 7 6 4 25 25 H 0.97003 * 120.00105 * 179.97438 * 11 10 8 26 26 H 0.97001 * 120.00549 * 179.69618 * 17 16 2 27 27 H 0.97005 * 119.99725 * 359.41324 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2887 1.1328 0.0000 4 6 3.5393 0.7351 -0.0064 5 7 4.6643 1.5676 -0.0135 6 6 3.5550 -0.6678 -0.0048 7 6 4.7825 -1.5420 -0.0110 8 6 5.1832 -1.8352 -1.4339 9 1 4.6069 -1.4287 -2.2519 10 6 6.2861 -2.6214 -1.6915 11 7 6.9882 -3.1160 -0.6954 12 14 6.7833 -2.9842 -3.4552 13 1 7.7269 -1.9397 -3.9283 14 1 7.4427 -4.3132 -3.5202 15 1 5.5754 -2.9881 -4.3191 16 6 2.2638 -1.0983 0.0028 17 7 1.8393 -2.4238 0.0067 18 1 -0.3634 0.0026 1.0276 19 1 -0.3634 0.8886 -0.5162 20 1 -0.3633 -0.8914 -0.5115 21 1 5.5538 1.1807 -0.0183 22 1 4.5545 2.5313 -0.0144 23 1 5.5977 -1.0273 0.4974 24 1 4.5651 -2.4771 0.5052 25 1 7.7640 -3.6695 -0.8766 26 1 2.4912 -3.1420 0.0040 27 1 0.8913 -2.6294 0.0162 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259907916.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:59 Heat of formation + Delta-G solvation = 50.668129 kcal Electronic energy + Delta-G solvation = -12287.878300 eV Core-core repulsion = 10081.071264 eV Total energy + Delta-G solvation = -2206.807037 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.73454 -36.15358 -35.52288 -34.27633 -32.42818 -31.01450 -28.06647 -26.49718 -24.27422 -21.37573 -20.77590 -18.38728 -18.19801 -17.38817 -16.74250 -16.25411 -16.14761 -15.74836 -14.73811 -14.32353 -13.98394 -13.58959 -13.21902 -13.12826 -12.59180 -12.46212 -12.26308 -11.74492 -11.39811 -10.96385 -10.63205 -10.46437 -8.45082 -8.35040 -7.90266 -6.16009 1.42490 1.43314 1.46503 1.54565 1.75271 2.37128 2.55823 2.89659 3.23154 3.51886 4.06076 4.54187 4.70308 4.76868 4.84897 5.11908 5.49313 5.78262 5.80328 5.91189 6.06546 6.43132 6.48195 6.83949 6.95048 6.96542 7.18132 7.51851 7.59753 9.01794 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.042078 B = 0.010932 C = 0.009898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.269768 B = 2560.567852 C = 2828.209677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.416 5.416 3 N -0.403 5.403 4 C 0.352 3.648 5 N -0.836 5.836 6 C -0.344 4.344 7 C 0.123 3.877 8 C -0.508 4.508 9 H 0.039 0.961 10 C 0.008 3.992 11 N -0.929 5.929 12 Si 0.953 3.047 13 H -0.277 1.277 14 H -0.281 1.281 15 H -0.273 1.273 16 C 0.372 3.628 17 N -0.839 5.839 18 H 0.077 0.923 19 H 0.089 0.911 20 H 0.098 0.902 21 H 0.410 0.590 22 H 0.404 0.596 23 H -0.008 1.008 24 H -0.004 1.004 25 H 0.261 0.739 26 H 0.417 0.583 27 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.904 3.118 0.868 11.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.208 5.208 3 N -0.238 5.238 4 C 0.092 3.908 5 N -0.389 5.389 6 C -0.363 4.363 7 C 0.085 3.915 8 C -0.547 4.547 9 H 0.057 0.943 10 C -0.189 4.189 11 N -0.571 5.571 12 Si 0.779 3.221 13 H -0.203 1.203 14 H -0.207 1.207 15 H -0.198 1.198 16 C 0.145 3.855 17 N -0.391 5.391 18 H 0.096 0.904 19 H 0.108 0.892 20 H 0.116 0.884 21 H 0.241 0.759 22 H 0.234 0.766 23 H 0.011 0.989 24 H 0.014 0.986 25 H 0.070 0.930 26 H 0.248 0.752 27 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -11.738 3.991 0.904 12.431 hybrid contribution 1.243 -1.090 -0.788 1.831 sum -10.495 2.901 0.116 10.889 Atomic orbital electron populations 1.21865 0.72824 1.04940 1.03588 1.47957 1.06214 1.00826 1.65814 1.77147 0.99055 1.06084 1.41556 1.19026 0.88203 0.89673 0.93867 1.41252 1.03914 1.07113 1.86581 1.19419 0.94382 0.92992 1.29469 1.16949 0.88648 0.91400 0.94512 1.21462 1.10603 1.29371 0.93220 0.94288 1.25760 0.96550 0.96040 1.00593 1.70070 1.18939 1.35566 1.32480 0.85638 0.78210 0.77470 0.80779 1.20275 1.20690 1.19814 1.17681 0.89225 0.82717 0.95842 1.41402 1.10681 1.01070 1.85905 0.90443 0.89229 0.88382 0.75921 0.76630 0.98933 0.98616 0.92961 0.75152 0.76125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.45 11.29 127.77 1.44 3.90 15 2 N -0.42 -14.97 4.04 -366.26 -1.48 -16.45 15 3 N -0.40 -16.75 12.58 -54.65 -0.69 -17.43 15 4 C 0.35 15.55 8.40 133.37 1.12 16.67 15 5 N -0.84 -31.46 9.15 -54.71 -0.50 -31.96 15 6 C -0.34 -16.24 5.33 -19.86 -0.11 -16.35 15 7 C 0.12 6.60 5.11 29.10 0.15 6.75 15 8 C -0.51 -28.97 9.09 25.60 0.23 -28.74 15 9 H 0.04 2.28 7.74 -2.91 -0.02 2.26 15 10 C 0.01 0.45 5.46 84.65 0.46 0.91 15 11 N -0.93 -55.20 13.29 21.45 0.28 -54.92 15 12 Si 0.95 44.58 29.54 68.60 2.03 46.60 15 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 14 H -0.28 -12.76 7.11 99.48 0.71 -12.06 15 15 H -0.27 -12.55 7.11 99.48 0.71 -11.84 15 16 C 0.37 14.78 7.95 131.24 1.04 15.82 15 17 N -0.84 -26.16 9.10 -55.23 -0.50 -26.66 15 18 H 0.08 1.47 8.14 -2.39 -0.02 1.45 15 19 H 0.09 1.88 8.14 -2.39 -0.02 1.86 15 20 H 0.10 1.66 7.52 -2.38 -0.02 1.64 15 21 H 0.41 15.71 8.32 -92.71 -0.77 14.94 15 22 H 0.40 12.52 8.96 -92.71 -0.83 11.69 15 23 H -0.01 -0.44 7.68 -2.39 -0.02 -0.46 15 24 H 0.00 -0.25 7.60 -2.39 -0.02 -0.26 15 25 H 0.26 14.67 8.31 -92.71 -0.77 13.90 15 26 H 0.42 13.92 8.19 -92.71 -0.76 13.16 15 27 H 0.41 8.98 8.11 -92.70 -0.75 8.22 15 Total: -1.00 -70.92 240.35 1.61 -69.32 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: -1.88 Total: 32.54 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 4.34 Total: -1.04 kcal Atomic # 7 Polarization: -144.54 SS G_CDS: -2.88 Total: -147.43 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -70.92 1.61 -69.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259907916.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.986 kcal (2) G-P(sol) polarization free energy of solvation -70.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds