Wall clock time and date at job start Mon Mar 30 2020 01:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31381 * 127.04855 * 2 1 4 4 N 1.28595 * 108.71428 * 180.02562 * 3 2 1 5 5 C 1.46503 * 124.61705 * 179.97438 * 4 3 2 6 6 N 1.28597 * 110.76515 * 359.75041 * 4 3 2 7 7 C 1.31371 * 108.71843 * 0.41065 * 6 4 3 8 8 C 1.50700 * 127.05248 * 179.86738 * 7 6 4 9 9 H 1.08994 * 109.47551 * 194.68380 * 8 7 6 10 10 N 1.46900 * 109.47395 * 314.68842 * 8 7 6 11 11 C 1.50702 * 109.46869 * 74.68435 * 8 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 8 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 8 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 8 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 H 1.09004 * 109.46949 * 269.97298 * 1 2 3 20 20 H 1.08999 * 109.47261 * 29.97317 * 1 2 3 21 21 H 1.09004 * 109.46977 * 149.97528 * 1 2 3 22 22 H 1.09005 * 109.46903 * 90.02406 * 5 4 3 23 23 H 1.08996 * 109.47430 * 210.02786 * 5 4 3 24 24 H 1.09003 * 109.47076 * 330.03132 * 5 4 3 25 25 H 1.00903 * 111.00086 * 59.99217 * 10 8 7 26 26 H 1.00902 * 111.00206 * 183.95155 * 10 8 7 27 27 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2986 1.0486 0.0000 4 7 3.5193 0.6441 -0.0005 5 6 4.6885 1.5267 -0.0013 6 7 3.5738 -0.6407 0.0043 7 6 2.3486 -1.1147 -0.0006 8 6 1.9357 -2.5641 -0.0005 9 1 0.8814 -2.6416 -0.2657 10 7 2.7427 -3.3033 -0.9804 11 6 2.1527 -3.1480 1.3717 12 1 2.5495 -2.5313 2.1645 13 6 1.8388 -4.4681 1.6167 14 7 1.3553 -5.2191 0.6514 15 14 2.1006 -5.1898 3.3196 16 1 0.8699 -5.0055 4.1299 17 1 2.4032 -6.6389 3.2019 18 1 3.2367 -4.4990 3.9808 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3634 0.8902 -0.5134 21 1 -0.3633 -0.8898 -0.5142 22 1 4.9793 1.7455 1.0263 23 1 5.5143 1.0355 -0.5158 24 1 4.4419 2.4561 -0.5146 25 1 3.7249 -3.2466 -0.7563 26 1 2.4416 -4.2641 -1.0457 27 1 1.1348 -6.1479 0.8237 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259946683.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:51 Heat of formation + Delta-G solvation = 98.137977 kcal Electronic energy + Delta-G solvation = -12379.362950 eV Core-core repulsion = 10174.614360 eV Total energy + Delta-G solvation = -2204.748589 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.66706 -35.11499 -33.32424 -31.90251 -30.63386 -29.18168 -26.40237 -25.20697 -22.77742 -20.33964 -19.52187 -16.59913 -16.49059 -15.92872 -14.84166 -13.96201 -13.33733 -13.21002 -13.02301 -12.71141 -12.42023 -12.10381 -11.97220 -11.20698 -11.04846 -10.83288 -10.43118 -10.01792 -9.93042 -9.77066 -9.21209 -8.62739 -8.10434 -7.14518 -6.06608 -4.21795 2.57969 3.02108 3.24949 3.31169 3.33557 3.43888 4.36532 4.75955 5.16130 5.27336 5.41077 5.48435 5.63101 6.05684 6.17075 6.25711 6.43804 6.77059 6.89837 7.12579 7.49795 7.66194 7.77929 8.11228 8.69674 8.96259 9.19201 9.22685 9.49373 10.91272 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.042535 B = 0.010971 C = 0.010487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.125779 B = 2551.490494 C = 2669.448372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.009 4.009 3 N -0.311 5.311 4 N -0.184 5.184 5 C 0.119 3.881 6 N -0.293 5.293 7 C 0.068 3.932 8 C 0.290 3.710 9 H 0.059 0.941 10 N -0.849 5.849 11 C -0.537 4.537 12 H 0.053 0.947 13 C 0.067 3.933 14 N -0.894 5.894 15 Si 0.898 3.102 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.275 1.275 19 H 0.071 0.929 20 H 0.063 0.937 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.319 0.681 26 H 0.356 0.644 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.104 8.542 -0.843 8.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.173 4.173 3 N -0.154 5.154 4 N -0.083 5.083 5 C -0.022 4.022 6 N -0.134 5.134 7 C -0.097 4.097 8 C 0.178 3.822 9 H 0.076 0.924 10 N -0.379 5.379 11 C -0.578 4.578 12 H 0.071 0.929 13 C -0.135 4.135 14 N -0.534 5.534 15 Si 0.726 3.274 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.200 1.200 19 H 0.090 0.910 20 H 0.082 0.918 21 H 0.099 0.901 22 H 0.096 0.904 23 H 0.113 0.887 24 H 0.110 0.890 25 H 0.128 0.872 26 H 0.172 0.828 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.888 9.740 -1.434 10.260 hybrid contribution -0.162 -1.476 1.909 2.419 sum 2.726 8.264 0.475 8.715 Atomic orbital electron populations 1.19950 0.86193 1.02638 1.02586 1.22990 0.97989 0.88973 1.07317 1.73742 0.91611 1.28491 1.21568 1.47617 1.04609 1.03359 1.52682 1.21811 0.83905 0.92657 1.03788 1.74019 1.25571 0.92978 1.20812 1.23837 0.86960 0.99313 0.99555 1.17366 0.94149 0.80097 0.90615 0.92358 1.59379 1.06566 1.20616 1.51319 1.21752 1.43392 0.95905 0.96759 0.92882 1.24973 0.94301 0.96913 0.97362 1.69740 1.43868 1.07814 1.31939 0.86490 0.78597 0.78112 0.84193 1.20489 1.21084 1.20029 0.90996 0.91844 0.90094 0.90417 0.88654 0.88987 0.87223 0.82791 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.94 10.29 36.01 0.37 -0.57 15 2 C -0.01 -0.20 7.35 -82.25 -0.60 -0.81 15 3 N -0.31 -6.38 12.05 33.72 0.41 -5.98 15 4 N -0.18 -3.62 4.35 -16.63 -0.07 -3.69 15 5 C 0.12 1.52 11.57 59.85 0.69 2.22 15 6 N -0.29 -6.73 11.98 33.71 0.40 -6.33 15 7 C 0.07 1.63 6.10 -82.26 -0.50 1.13 15 8 C 0.29 7.49 3.16 -70.02 -0.22 7.27 15 9 H 0.06 1.57 7.19 -51.93 -0.37 1.19 15 10 N -0.85 -21.31 9.18 -6.65 -0.06 -21.37 15 11 C -0.54 -14.87 8.71 -34.44 -0.30 -15.17 15 12 H 0.05 1.53 7.74 -52.49 -0.41 1.12 15 13 C 0.07 1.81 5.38 -17.82 -0.10 1.72 15 14 N -0.89 -24.53 11.55 55.43 0.64 -23.89 15 15 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 15 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 19 H 0.07 1.17 8.14 -51.93 -0.42 0.74 15 20 H 0.06 0.94 8.14 -51.93 -0.42 0.51 15 21 H 0.08 1.38 7.32 -51.93 -0.38 1.00 15 22 H 0.08 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.09 1.06 8.14 -51.93 -0.42 0.64 15 24 H 0.09 0.94 8.14 -51.93 -0.42 0.52 15 25 H 0.32 7.95 8.92 -39.29 -0.35 7.60 15 26 H 0.36 9.26 7.09 -39.29 -0.28 8.98 15 27 H 0.27 6.95 8.31 -40.82 -0.34 6.62 15 LS Contribution 239.80 15.07 3.61 3.61 Total: -1.00 -31.04 239.80 -3.79 -34.83 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -3.04 Total: 10.85 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -0.66 Total: -4.22 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 1.32 Total: -61.26 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -31.04 -3.79 -34.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259946683.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.967 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds