Wall clock time and date at job start Mon Mar 30 2020 02:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00145 * 2 1 4 4 H 1.48495 * 109.46979 * 270.00052 * 3 2 1 5 5 H 1.48502 * 109.46768 * 29.99811 * 3 2 1 6 6 H 1.48494 * 109.47198 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00124 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47283 * 180.02562 * 9 7 2 11 11 H 1.08999 * 115.55296 * 29.30258 * 10 9 7 12 12 C 1.53052 * 117.50766 * 243.54494 * 10 9 7 13 13 C 1.52698 * 117.50411 * 174.99898 * 10 9 7 14 14 C 1.53256 * 117.88830 * 215.25488 * 13 10 9 15 15 C 1.53322 * 108.48126 * 196.26983 * 14 13 10 16 16 O 1.42876 * 109.35496 * 305.98965 * 15 14 13 17 17 C 1.42927 * 114.46417 * 64.34719 * 16 15 14 18 18 C 1.53249 * 117.88546 * 359.69546 * 13 10 9 19 19 H 0.97001 * 120.00215 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47011 * 60.00408 * 9 7 2 21 21 H 1.09000 * 109.47093 * 300.00473 * 9 7 2 22 22 H 1.09005 * 117.50491 * 145.05976 * 12 10 9 23 23 H 1.09007 * 117.50473 * 0.02562 * 12 10 9 24 24 H 1.08997 * 109.62957 * 76.57103 * 14 13 10 25 25 H 1.08998 * 109.63351 * 315.97205 * 14 13 10 26 26 H 1.09002 * 109.49601 * 65.96273 * 15 14 13 27 27 H 1.08996 * 109.49556 * 186.02116 * 15 14 13 28 28 H 1.08994 * 109.48581 * 175.69696 * 17 16 15 29 29 H 1.09006 * 109.50369 * 55.63407 * 17 16 15 30 30 H 1.09007 * 109.62909 * 283.43139 * 18 13 10 31 31 H 1.08996 * 109.63737 * 43.82586 * 18 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 3.2026 -3.4622 0.4808 12 6 2.2450 -4.5924 -1.2159 13 6 1.6780 -5.0748 0.1175 14 6 2.4879 -6.1088 0.9073 15 6 1.9633 -7.5066 0.5583 16 8 0.5525 -7.5517 0.7793 17 6 -0.2073 -6.6873 -0.0682 18 6 0.1578 -5.2293 0.2347 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8896 22 1 3.2025 -5.0045 -1.5346 23 1 1.5367 -4.3756 -2.0156 24 1 2.3685 -5.9290 1.9757 25 1 3.5409 -6.0343 0.6358 26 1 2.1746 -7.7235 -0.4888 27 1 2.4542 -8.2474 1.1895 28 1 -1.2707 -6.8415 0.1148 29 1 0.0184 -6.9097 -1.1112 30 1 -0.1593 -4.9748 1.2460 31 1 -0.3336 -4.5694 -0.4802 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259994840.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:58 Heat of formation + Delta-G solvation = -44.565748 kcal Electronic energy + Delta-G solvation = -12521.763362 eV Core-core repulsion = 10382.074267 eV Total energy + Delta-G solvation = -2139.689095 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.40544 -36.53911 -32.86031 -31.00029 -30.05361 -27.69384 -23.64505 -23.06875 -22.85447 -19.67726 -18.12720 -16.47053 -15.77660 -15.53817 -14.69942 -14.58787 -14.10570 -13.48361 -12.89720 -12.44346 -12.16766 -11.94213 -11.61739 -11.12269 -10.95803 -10.83068 -10.56107 -10.42493 -10.21550 -9.94376 -9.57515 -9.16119 -8.99283 -8.51200 -8.24562 -5.99675 -4.01297 3.32167 3.38312 3.41778 4.07314 4.39616 4.49298 5.03068 5.24288 5.30461 5.34245 5.35982 5.45375 5.59057 5.71972 5.80407 5.89551 6.05561 6.14218 6.23467 6.30332 6.46489 6.62590 6.75391 6.81338 7.10775 7.41003 7.68935 7.78622 7.99352 8.43974 9.04306 9.62109 11.11519 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.071260 B = 0.007906 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.833880 B = 3540.719510 C = 3749.860450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.050 3.950 10 C -0.105 4.105 11 H 0.090 0.910 12 C -0.178 4.178 13 C -0.147 4.147 14 C -0.113 4.113 15 C 0.066 3.934 16 O -0.389 6.389 17 C 0.065 3.935 18 C -0.111 4.111 19 H 0.260 0.740 20 H 0.018 0.982 21 H 0.022 0.978 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.355 -11.831 -0.383 12.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.013 3.987 10 C -0.123 4.123 11 H 0.108 0.892 12 C -0.215 4.215 13 C -0.147 4.147 14 C -0.151 4.151 15 C -0.011 4.011 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.148 4.148 19 H 0.070 0.930 20 H 0.036 0.964 21 H 0.040 0.960 22 H 0.097 0.903 23 H 0.106 0.894 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.117 -11.831 -0.243 12.021 hybrid contribution 0.647 1.226 -0.290 1.416 sum 2.764 -10.605 -0.532 10.973 Atomic orbital electron populations 1.69957 1.06019 1.26584 1.51011 1.25017 0.94857 0.99218 0.95430 0.86593 0.79846 0.83498 0.78070 1.20701 1.21226 1.19907 1.21252 0.93022 0.90897 1.50263 0.92696 1.18731 0.92855 0.89916 0.97164 1.22787 1.01086 0.90101 0.98298 0.89174 1.23078 1.01259 1.05664 0.91546 1.21448 0.94535 0.98295 1.00449 1.21740 0.98718 0.94175 1.00443 1.22541 0.81698 0.96718 1.00105 1.87816 1.17796 1.63779 1.61406 1.22628 0.95374 0.89773 0.93401 1.21680 0.93889 0.96154 1.03118 0.93016 0.96356 0.95984 0.90293 0.89408 0.91066 0.91329 0.93538 0.89546 0.89315 0.93527 0.90982 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.72 9.08 -34.44 -0.31 -15.03 16 8 H 0.05 1.53 7.68 -52.48 -0.40 1.12 16 9 C 0.05 1.30 4.13 -27.88 -0.12 1.18 16 10 C -0.10 -2.21 5.43 -90.75 -0.49 -2.70 16 11 H 0.09 1.91 8.00 -51.93 -0.42 1.50 16 12 C -0.18 -3.21 9.57 -26.85 -0.26 -3.47 16 13 C -0.15 -2.59 2.03 -154.55 -0.31 -2.90 16 14 C -0.11 -1.68 5.92 -26.43 -0.16 -1.84 16 15 C 0.07 0.88 6.84 37.32 0.26 1.14 16 16 O -0.39 -5.97 10.70 -35.23 -0.38 -6.35 16 17 C 0.06 0.94 6.84 37.32 0.26 1.19 16 18 C -0.11 -1.90 5.14 -26.44 -0.14 -2.03 16 19 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 20 H 0.02 0.50 7.59 -51.93 -0.39 0.10 16 21 H 0.02 0.61 8.03 -51.93 -0.42 0.19 16 22 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 23 H 0.09 1.61 8.03 -51.93 -0.42 1.19 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 31 H 0.08 1.44 7.34 -51.93 -0.38 1.06 16 LS Contribution 255.33 15.07 3.85 3.85 Total: -1.00 -30.11 255.33 -7.12 -37.24 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.94 Total: -2.32 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -1.37 Total: -22.95 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.74 Total: -26.23 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.38 Total: -6.35 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.11 -7.12 -37.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259994840.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.328 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds