Wall clock time and date at job start Mon Mar 30 2020 02:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00145 * 2 1 4 4 H 1.48495 * 109.46979 * 270.00052 * 3 2 1 5 5 H 1.48502 * 109.46768 * 29.99811 * 3 2 1 6 6 H 1.48494 * 109.47198 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00124 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47283 * 180.02562 * 9 7 2 11 11 H 1.08999 * 115.55296 * 29.30258 * 10 9 7 12 12 C 1.53052 * 117.50766 * 243.54494 * 10 9 7 13 13 C 1.52698 * 117.50411 * 174.99898 * 10 9 7 14 14 C 1.53256 * 117.88830 * 215.25488 * 13 10 9 15 15 C 1.53322 * 108.48126 * 196.26983 * 14 13 10 16 16 O 1.42876 * 109.35496 * 305.98965 * 15 14 13 17 17 C 1.42927 * 114.46417 * 64.34719 * 16 15 14 18 18 C 1.53249 * 117.88546 * 359.69546 * 13 10 9 19 19 H 0.97001 * 120.00215 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47011 * 60.00408 * 9 7 2 21 21 H 1.09000 * 109.47093 * 300.00473 * 9 7 2 22 22 H 1.09005 * 117.50491 * 145.05976 * 12 10 9 23 23 H 1.09007 * 117.50473 * 0.02562 * 12 10 9 24 24 H 1.08997 * 109.62957 * 76.57103 * 14 13 10 25 25 H 1.08998 * 109.63351 * 315.97205 * 14 13 10 26 26 H 1.09002 * 109.49601 * 65.96273 * 15 14 13 27 27 H 1.08996 * 109.49556 * 186.02116 * 15 14 13 28 28 H 1.08994 * 109.48581 * 175.69696 * 17 16 15 29 29 H 1.09006 * 109.50369 * 55.63407 * 17 16 15 30 30 H 1.09007 * 109.62909 * 283.43139 * 18 13 10 31 31 H 1.08996 * 109.63737 * 43.82586 * 18 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 3.2026 -3.4622 0.4808 12 6 2.2450 -4.5924 -1.2159 13 6 1.6780 -5.0748 0.1175 14 6 2.4879 -6.1088 0.9073 15 6 1.9633 -7.5066 0.5583 16 8 0.5525 -7.5517 0.7793 17 6 -0.2073 -6.6873 -0.0682 18 6 0.1578 -5.2293 0.2347 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8896 22 1 3.2025 -5.0045 -1.5346 23 1 1.5367 -4.3756 -2.0156 24 1 2.3685 -5.9290 1.9757 25 1 3.5409 -6.0343 0.6358 26 1 2.1746 -7.7235 -0.4888 27 1 2.4542 -8.2474 1.1895 28 1 -1.2707 -6.8415 0.1148 29 1 0.0184 -6.9097 -1.1112 30 1 -0.1593 -4.9748 1.2460 31 1 -0.3336 -4.5694 -0.4802 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259994840.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:58 Heat of formation + Delta-G solvation = -62.650893 kcal Electronic energy + Delta-G solvation = -12522.547592 eV Core-core repulsion = 10382.074267 eV Total energy + Delta-G solvation = -2140.473326 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.73070 -37.92797 -35.00128 -32.20675 -31.62641 -29.55539 -25.44163 -24.49666 -24.14800 -21.31987 -19.52974 -18.57628 -16.93909 -16.86933 -16.59742 -15.89317 -15.58072 -14.82151 -14.49681 -14.21082 -13.93790 -13.42959 -13.11874 -12.88777 -12.73267 -12.45928 -12.27519 -11.83200 -11.64695 -11.51804 -11.23358 -10.97771 -10.73916 -10.39514 -9.91195 -8.21138 -6.32022 1.38211 1.39801 1.50909 2.39281 2.91404 2.99144 3.12639 3.71776 3.93989 3.99575 4.11389 4.13125 4.31173 4.56844 4.62409 4.70810 4.78563 4.79011 4.86111 5.00106 5.01935 5.16078 5.28195 5.31197 5.43609 5.52903 5.65988 5.81795 6.25520 6.30389 6.83361 7.36684 8.90340 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.071260 B = 0.007906 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.833880 B = 3540.719510 C = 3749.860450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.058 0.942 9 C 0.063 3.937 10 C -0.139 4.139 11 H 0.089 0.911 12 C -0.160 4.160 13 C -0.131 4.131 14 C -0.111 4.111 15 C 0.065 3.935 16 O -0.401 6.401 17 C 0.072 3.928 18 C -0.115 4.115 19 H 0.264 0.736 20 H -0.008 1.008 21 H -0.011 1.011 22 H 0.108 0.892 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.781 -12.892 -0.737 13.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.578 4.578 8 H 0.076 0.924 9 C 0.026 3.974 10 C -0.157 4.157 11 H 0.107 0.893 12 C -0.197 4.197 13 C -0.131 4.131 14 C -0.149 4.149 15 C -0.011 4.011 16 O -0.320 6.320 17 C -0.004 4.004 18 C -0.153 4.153 19 H 0.072 0.928 20 H 0.010 0.990 21 H 0.007 0.993 22 H 0.127 0.873 23 H 0.098 0.902 24 H 0.083 0.917 25 H 0.105 0.895 26 H 0.079 0.921 27 H 0.132 0.868 28 H 0.123 0.877 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.552 -12.908 -0.598 13.401 hybrid contribution 0.173 1.553 -0.169 1.572 sum 3.726 -11.354 -0.767 11.975 Atomic orbital electron populations 1.70094 1.07768 1.27757 1.51736 1.25986 0.95797 1.03341 0.94769 0.85441 0.78640 0.78407 0.78533 1.19683 1.20659 1.18822 1.21697 0.93450 0.92310 1.50340 0.92383 1.18453 0.93055 0.91668 0.94242 1.22472 1.00257 0.90573 1.02435 0.89331 1.23112 1.02439 1.03337 0.90765 1.21585 0.95055 0.96228 1.00242 1.21796 0.99335 0.94289 0.99482 1.22730 0.80680 0.96002 1.01715 1.87815 1.18971 1.63488 1.61770 1.22611 0.96394 0.87328 0.94106 1.21696 0.93790 0.98230 1.01560 0.92771 0.98976 0.99318 0.87325 0.90152 0.91746 0.89517 0.92068 0.86795 0.87672 0.92075 0.92701 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.98 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.54 -31.55 9.08 25.60 0.23 -31.32 16 8 H 0.06 3.26 7.68 -2.91 -0.02 3.24 16 9 C 0.06 3.40 4.13 29.85 0.12 3.52 16 10 C -0.14 -5.94 5.43 -10.88 -0.06 -6.00 16 11 H 0.09 3.77 8.00 -2.39 -0.02 3.75 16 12 C -0.16 -5.54 9.57 30.52 0.29 -5.25 16 13 C -0.13 -4.50 2.03 -52.21 -0.11 -4.61 16 14 C -0.11 -3.05 5.92 30.79 0.18 -2.87 16 15 C 0.06 1.50 6.84 72.09 0.49 1.99 16 16 O -0.40 -11.25 10.70 -148.98 -1.59 -12.84 16 17 C 0.07 1.96 6.84 72.09 0.49 2.45 16 18 C -0.11 -3.97 5.14 30.79 0.16 -3.81 16 19 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 20 H -0.01 -0.47 7.59 -2.39 -0.02 -0.49 16 21 H -0.01 -0.68 8.03 -2.39 -0.02 -0.70 16 22 H 0.11 3.14 8.14 -2.38 -0.02 3.12 16 23 H 0.08 2.91 8.03 -2.38 -0.02 2.89 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.09 2.07 8.08 -2.39 -0.02 2.05 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.06 2.26 7.34 -2.39 -0.02 2.24 16 Total: -1.00 -65.74 255.33 4.07 -61.67 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 1.08 Total: 7.10 kcal Atomic # 6 Polarization: -47.79 SS G_CDS: 2.27 Total: -45.52 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.28 Total: -57.39 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -1.59 Total: -12.84 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -65.74 4.07 -61.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259994840.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.985 kcal (2) G-P(sol) polarization free energy of solvation -65.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds