Wall clock time and date at job start Mon Mar 30 2020 01:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33240 * 125.52682 * 2 1 4 4 C 1.30834 * 109.82638 * 180.19895 * 3 2 1 5 5 C 1.50698 * 125.96096 * 179.86392 * 4 3 2 6 6 H 1.08998 * 109.47607 * 194.69443 * 5 4 3 7 7 N 1.46901 * 109.47110 * 314.69025 * 5 4 3 8 8 C 1.50702 * 109.47465 * 74.68648 * 5 4 3 9 9 H 1.08002 * 119.99441 * 0.02562 * 8 5 4 10 10 C 1.37871 * 120.00075 * 180.02562 * 8 5 4 11 11 N 1.31514 * 120.00481 * 359.97438 * 10 8 5 12 12 Si 1.86803 * 119.99886 * 179.73007 * 10 8 5 13 13 H 1.48502 * 109.46964 * 270.27509 * 12 10 8 14 14 H 1.48505 * 109.47036 * 30.26897 * 12 10 8 15 15 H 1.48490 * 109.47395 * 150.27411 * 12 10 8 16 16 N 1.34428 * 108.08031 * 359.59963 * 4 3 2 17 17 C 1.46495 * 126.82648 * 180.20669 * 16 4 3 18 18 N 1.30719 * 125.52601 * 179.75810 * 2 1 3 19 19 H 1.08997 * 109.47508 * 270.26545 * 1 2 3 20 20 H 1.09002 * 109.46968 * 30.26461 * 1 2 3 21 21 H 1.09002 * 109.47279 * 150.26750 * 1 2 3 22 22 H 1.00908 * 111.00077 * 296.04383 * 7 5 4 23 23 H 1.00905 * 111.00224 * 59.99512 * 7 5 4 24 24 H 0.97005 * 119.99656 * 359.72741 * 11 10 8 25 25 H 1.09001 * 109.47262 * 89.99885 * 17 16 4 26 26 H 1.08995 * 109.47494 * 209.99750 * 17 16 4 27 27 H 1.09002 * 109.47082 * 329.99903 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2812 1.0844 0.0000 4 6 3.5407 0.7303 -0.0043 5 6 4.7227 1.6651 -0.0086 6 1 5.6235 1.1108 -0.2723 7 7 4.4992 2.7326 -0.9928 8 6 4.8888 2.2715 1.3610 9 1 4.2068 2.0060 2.1553 10 6 5.9113 3.1649 1.6000 11 7 6.7420 3.4878 0.6329 12 14 6.1125 3.9223 3.2957 13 1 5.3231 5.1776 3.3740 14 1 5.6277 2.9677 4.3249 15 1 7.5465 4.2235 3.5364 16 7 3.5966 -0.6128 0.0018 17 6 4.8047 -1.4414 0.0042 18 7 2.2666 -1.0639 0.0045 19 1 -0.3634 0.0048 1.0276 20 1 -0.3633 0.8876 -0.5179 21 1 -0.3634 -0.8924 -0.5097 22 1 4.4490 2.3574 -1.9282 23 1 3.6692 3.2615 -0.7703 24 1 6.6378 3.0942 -0.2475 25 1 5.1055 -1.6422 1.0325 26 1 4.6004 -2.3832 -0.5050 27 1 5.6071 -0.9153 -0.5129 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260060625.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:04 Heat of formation + Delta-G solvation = 78.398063 kcal Electronic energy + Delta-G solvation = -12407.959693 eV Core-core repulsion = 10202.355116 eV Total energy + Delta-G solvation = -2205.604576 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.43624 -35.20500 -33.75491 -31.65077 -30.32781 -29.00319 -26.39461 -25.26938 -22.69781 -20.11717 -19.65369 -16.96391 -16.23371 -15.42285 -14.59769 -14.28719 -13.64603 -13.47691 -13.41062 -12.75408 -12.50981 -12.11775 -11.95216 -11.78857 -11.15478 -10.78597 -10.54392 -10.10168 -9.32543 -9.23567 -8.97734 -8.47380 -8.39961 -7.76593 -6.30895 -4.14392 2.26003 2.92284 3.45609 3.48182 3.56590 3.64383 4.53680 4.70699 4.94962 5.34511 5.40904 5.45284 5.59308 5.71093 5.77122 5.97379 5.97767 6.10193 6.72209 6.98580 7.08670 7.44873 7.74735 8.14931 8.48169 8.63276 8.84185 8.91889 9.67026 11.09750 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.041963 B = 0.011111 C = 0.010576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.092872 B = 2519.362910 C = 2646.911425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.208 3.792 3 N -0.549 5.549 4 C 0.293 3.707 5 C 0.282 3.718 6 H 0.048 0.952 7 N -0.814 5.814 8 C -0.605 4.605 9 H 0.049 0.951 10 C 0.042 3.958 11 N -0.886 5.886 12 Si 1.071 2.929 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.284 1.284 16 N -0.391 5.391 17 C 0.104 3.896 18 N -0.351 5.351 19 H 0.077 0.923 20 H 0.081 0.919 21 H 0.073 0.927 22 H 0.302 0.698 23 H 0.343 0.657 24 H 0.289 0.711 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.265 -6.810 -1.783 8.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.075 4.075 3 N -0.278 5.278 4 C 0.015 3.985 5 C 0.169 3.831 6 H 0.065 0.935 7 N -0.342 5.342 8 C -0.645 4.645 9 H 0.067 0.933 10 C -0.168 4.168 11 N -0.519 5.519 12 Si 0.899 3.101 13 H -0.213 1.213 14 H -0.218 1.218 15 H -0.210 1.210 16 N -0.180 5.180 17 C -0.039 4.039 18 N -0.181 5.181 19 H 0.095 0.905 20 H 0.099 0.901 21 H 0.092 0.908 22 H 0.113 0.887 23 H 0.157 0.843 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.926 -5.932 -0.684 7.147 hybrid contribution -1.656 -1.694 -1.023 2.581 sum -5.583 -7.626 -1.707 9.604 Atomic orbital electron populations 1.19954 0.84805 1.03139 1.03079 1.24186 0.97910 0.86608 0.98764 1.70325 1.00292 1.30096 1.27116 1.26919 0.97045 0.83498 0.91016 1.18178 0.84756 0.85332 0.94853 0.93467 1.59535 1.45784 1.25820 1.03013 1.21549 1.18036 1.32013 0.92914 0.93262 1.25665 0.92193 0.94201 1.04734 1.70559 1.36113 1.40759 1.04477 0.83531 0.76239 0.76124 0.74164 1.21302 1.21755 1.20978 1.50212 1.05320 1.06372 1.56088 1.21792 0.83330 0.95150 1.03622 1.77753 0.87468 1.23085 1.29787 0.90465 0.90063 0.90786 0.88746 0.84337 0.89871 0.90540 0.90035 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.73 10.51 36.00 0.38 -0.35 15 2 C 0.21 4.23 8.14 -156.85 -1.28 2.95 15 3 N -0.55 -12.64 11.05 -8.16 -0.09 -12.73 15 4 C 0.29 6.75 6.74 -155.69 -1.05 5.70 15 5 C 0.28 6.86 2.60 -70.02 -0.18 6.68 15 6 H 0.05 1.16 6.67 -51.93 -0.35 0.81 15 7 N -0.81 -18.81 7.78 -6.65 -0.05 -18.87 15 8 C -0.61 -16.73 8.71 -34.44 -0.30 -17.03 15 9 H 0.05 1.44 7.74 -52.49 -0.41 1.03 15 10 C 0.04 1.18 5.39 -17.82 -0.10 1.08 15 11 N -0.89 -25.69 13.50 55.43 0.75 -24.94 15 12 Si 1.07 24.95 29.90 -169.99 -5.08 19.87 15 13 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 14 H -0.29 -6.57 7.11 56.52 0.40 -6.17 15 15 H -0.28 -6.52 7.11 56.52 0.40 -6.11 15 16 N -0.39 -8.10 4.04 -65.10 -0.26 -8.36 15 17 C 0.10 1.63 11.29 59.84 0.68 2.31 15 18 N -0.35 -7.31 12.70 32.42 0.41 -6.90 15 19 H 0.08 1.02 8.14 -51.93 -0.42 0.60 15 20 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.07 0.92 8.14 -51.93 -0.42 0.49 15 22 H 0.30 6.17 9.06 -39.29 -0.36 5.82 15 23 H 0.34 8.11 8.86 -39.29 -0.35 7.77 15 24 H 0.29 8.30 6.40 -40.82 -0.26 8.04 15 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 15 27 H 0.09 1.33 6.98 -51.93 -0.36 0.97 15 LS Contribution 240.09 15.07 3.62 3.62 Total: -1.00 -32.31 240.09 -5.55 -37.86 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -2.99 Total: 9.11 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.85 Total: 1.33 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: 0.76 Total: -71.80 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -32.31 -5.55 -37.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060625.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.262 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds