Wall clock time and date at job start Mon Mar 30 2020 01:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33242 * 125.52658 * 2 1 4 4 C 1.30824 * 109.83096 * 179.97438 * 3 2 1 5 5 C 1.50704 * 125.96295 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.46823 * 165.02644 * 5 4 3 7 7 N 1.46898 * 109.47382 * 45.01769 * 5 4 3 8 8 C 1.50702 * 109.46642 * 285.01867 * 5 4 3 9 9 H 1.08006 * 120.00245 * 5.17469 * 8 5 4 10 10 C 1.37877 * 119.99803 * 185.16547 * 8 5 4 11 11 N 1.31520 * 119.99974 * 186.64096 * 10 8 5 12 12 Si 1.86797 * 120.00107 * 6.64992 * 10 8 5 13 13 H 1.48505 * 109.46770 * 269.99498 * 12 10 8 14 14 H 1.48499 * 109.47331 * 29.99174 * 12 10 8 15 15 H 1.48498 * 109.47575 * 149.99436 * 12 10 8 16 16 N 1.34434 * 108.07679 * 0.26222 * 4 3 2 17 17 C 1.46501 * 126.82485 * 179.74195 * 16 4 3 18 18 N 1.30712 * 125.52735 * 179.97438 * 2 1 3 19 19 H 1.08991 * 109.47554 * 89.99640 * 1 2 3 20 20 H 1.09003 * 109.46748 * 210.00356 * 1 2 3 21 21 H 1.09002 * 109.47093 * 329.99193 * 1 2 3 22 22 H 1.00897 * 111.00041 * 173.97662 * 7 5 4 23 23 H 1.00900 * 111.00023 * 297.93793 * 7 5 4 24 24 H 0.97002 * 119.99986 * 354.94088 * 11 10 8 25 25 H 1.08999 * 109.47279 * 89.99494 * 17 16 4 26 26 H 1.08992 * 109.47027 * 210.00189 * 17 16 4 27 27 H 1.08999 * 109.46702 * 330.00179 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0844 0.0000 4 6 3.5407 0.7305 0.0006 5 6 4.7227 1.6654 0.0013 6 1 5.6234 1.1120 0.2672 7 7 4.4990 2.7368 0.9810 8 6 4.8889 2.2659 -1.3709 9 1 4.1593 2.0634 -2.1410 10 6 5.9723 3.0742 -1.6430 11 7 6.0506 3.7029 -2.7956 12 14 7.3289 3.2760 -0.3749 13 1 7.0106 4.4238 0.5120 14 1 7.4356 2.0374 0.4373 15 1 8.6191 3.5274 -1.0659 16 7 3.5966 -0.6127 -0.0049 17 6 4.8047 -1.4413 -0.0117 18 7 2.2666 -1.0638 0.0005 19 1 -0.3634 0.0001 -1.0275 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3633 0.8899 0.5140 22 1 5.3171 3.3205 1.0716 23 1 3.6882 3.2858 0.7376 24 1 5.3849 3.5414 -3.4824 25 1 5.1074 -1.6508 1.0142 26 1 4.5995 -2.3786 -0.5287 27 1 5.6062 -0.9107 -0.5258 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260060634.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:06 Heat of formation + Delta-G solvation = 80.219392 kcal Electronic energy + Delta-G solvation = -12426.346720 eV Core-core repulsion = 10220.821122 eV Total energy + Delta-G solvation = -2205.525598 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.38133 -35.23455 -33.72435 -32.01366 -30.56931 -28.98783 -26.50666 -25.36147 -22.65075 -20.07632 -19.25924 -17.85293 -16.31998 -15.46509 -15.02492 -13.91579 -13.48659 -13.37420 -13.36524 -12.86310 -12.50407 -12.32999 -12.18369 -11.86694 -11.45087 -10.98174 -10.57664 -10.14347 -9.36591 -9.23053 -9.00199 -8.79144 -8.68252 -7.76244 -6.64427 -4.40857 2.31757 2.94387 3.18846 3.23633 3.37619 3.65083 4.22481 4.74746 4.95122 5.08962 5.40803 5.48600 5.52869 5.73155 5.83010 5.95122 6.04019 6.07540 6.68909 6.98840 7.14804 7.37935 7.60741 8.03214 8.16670 8.36759 8.66548 8.90028 9.33293 10.69130 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.046784 B = 0.011731 C = 0.010955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.345313 B = 2386.322091 C = 2555.276700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.209 3.791 3 N -0.542 5.542 4 C 0.344 3.656 5 C 0.251 3.749 6 H 0.058 0.942 7 N -0.845 5.845 8 C -0.621 4.621 9 H 0.061 0.939 10 C 0.033 3.967 11 N -0.895 5.895 12 Si 1.046 2.954 13 H -0.276 1.276 14 H -0.275 1.275 15 H -0.282 1.282 16 N -0.392 5.392 17 C 0.101 3.899 18 N -0.348 5.348 19 H 0.076 0.924 20 H 0.073 0.927 21 H 0.081 0.919 22 H 0.326 0.674 23 H 0.346 0.654 24 H 0.272 0.728 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.561 -6.694 6.019 9.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.073 4.073 3 N -0.270 5.270 4 C 0.068 3.932 5 C 0.139 3.861 6 H 0.075 0.925 7 N -0.378 5.378 8 C -0.662 4.662 9 H 0.079 0.921 10 C -0.174 4.174 11 N -0.528 5.528 12 Si 0.873 3.127 13 H -0.203 1.203 14 H -0.201 1.201 15 H -0.208 1.208 16 N -0.182 5.182 17 C -0.042 4.042 18 N -0.178 5.178 19 H 0.095 0.905 20 H 0.092 0.908 21 H 0.100 0.900 22 H 0.141 0.859 23 H 0.159 0.841 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.556 -6.958 6.853 9.889 hybrid contribution -0.986 -0.248 -1.339 1.681 sum -2.541 -7.205 5.514 9.423 Atomic orbital electron populations 1.19956 0.84815 1.03211 1.03004 1.24180 0.97923 0.86593 0.98640 1.70327 1.00196 1.29856 1.26650 1.24716 0.95156 0.82778 0.90547 1.18029 0.86835 0.88239 0.92998 0.92466 1.59394 1.09006 1.17380 1.52011 1.22518 1.12019 1.34819 0.96811 0.92115 1.25854 0.98788 0.92187 1.00567 1.70784 1.38335 1.37821 1.05838 0.83952 0.76578 0.77157 0.74982 1.20253 1.20127 1.20789 1.50072 1.05452 1.06012 1.56641 1.21830 0.83683 0.95687 1.03021 1.77768 0.87161 1.22881 1.30033 0.90533 0.90768 0.89992 0.85937 0.84113 0.91790 0.90980 0.89775 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.75 10.51 36.01 0.38 -0.37 15 2 C 0.21 4.33 8.14 -156.85 -1.28 3.05 15 3 N -0.54 -12.74 11.09 -8.16 -0.09 -12.83 15 4 C 0.34 8.06 6.75 -155.69 -1.05 7.01 15 5 C 0.25 5.96 2.51 -70.01 -0.18 5.78 15 6 H 0.06 1.30 5.63 -51.93 -0.29 1.01 15 7 N -0.84 -18.82 9.18 -6.65 -0.06 -18.88 15 8 C -0.62 -16.92 9.07 -34.44 -0.31 -17.23 15 9 H 0.06 1.87 7.98 -52.48 -0.42 1.46 15 10 C 0.03 0.90 5.46 -17.82 -0.10 0.81 15 11 N -0.89 -26.34 13.70 55.43 0.76 -25.58 15 12 Si 1.05 23.12 25.54 -169.99 -4.34 18.78 15 13 H -0.28 -5.73 6.93 56.52 0.39 -5.34 15 14 H -0.28 -5.56 6.36 56.52 0.36 -5.20 15 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 16 N -0.39 -8.24 4.04 -65.10 -0.26 -8.50 15 17 C 0.10 1.58 11.11 59.85 0.67 2.24 15 18 N -0.35 -7.34 12.70 32.42 0.41 -6.93 15 19 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 20 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 21 H 0.08 1.12 8.14 -51.93 -0.42 0.69 15 22 H 0.33 6.95 5.47 -39.29 -0.21 6.73 15 23 H 0.35 7.87 8.90 -39.29 -0.35 7.52 15 24 H 0.27 8.10 8.72 -40.82 -0.36 7.74 15 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 26 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 27 H 0.09 1.46 7.39 -51.93 -0.38 1.08 15 LS Contribution 235.00 15.07 3.54 3.54 Total: -1.00 -32.05 235.00 -4.89 -36.94 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -2.98 Total: 12.17 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -1.87 Total: 1.29 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: 0.76 Total: -72.72 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -4.34 Total: 18.78 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -32.05 -4.89 -36.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060634.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.162 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds