Wall clock time and date at job start Mon Mar 30 2020 02:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35025 * 1 3 3 C 1.40080 * 120.00014 * 2 1 4 4 H 1.07998 * 119.99719 * 203.91843 * 3 2 1 5 5 C 1.40307 * 119.99611 * 23.91443 * 3 2 1 6 6 N 1.30686 * 120.00392 * 34.51018 * 5 3 2 7 7 Si 1.86802 * 119.99899 * 214.50808 * 5 3 2 8 8 H 1.48500 * 109.47218 * 180.02562 * 7 5 3 9 9 H 1.48498 * 109.47080 * 60.00022 * 7 5 3 10 10 H 1.48507 * 109.47136 * 300.00317 * 7 5 3 11 11 C 1.50698 * 120.00366 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47318 * 94.99588 * 11 2 1 13 13 H 1.09002 * 109.47805 * 55.00477 * 12 11 2 14 14 C 1.53096 * 109.48213 * 175.02233 * 12 11 2 15 15 C 1.53178 * 109.16455 * 177.58216 * 14 12 11 16 16 C 1.53182 * 109.04344 * 303.03855 * 15 14 12 17 17 C 1.53086 * 109.16293 * 56.97522 * 16 15 14 18 18 O 1.42897 * 109.48272 * 294.97943 * 12 11 2 19 19 H 1.08000 * 119.99966 * 185.81182 * 1 2 3 20 20 H 1.07999 * 120.00507 * 5.81044 * 1 2 3 21 21 H 0.97007 * 119.99520 * 5.78469 * 6 5 3 22 22 H 1.09004 * 109.46933 * 215.00226 * 11 2 1 23 23 H 1.09004 * 109.47093 * 335.00015 * 11 2 1 24 24 H 1.08999 * 109.52311 * 297.50456 * 14 12 11 25 25 H 1.09005 * 109.51994 * 57.68460 * 14 12 11 26 26 H 1.08995 * 109.54461 * 183.16665 * 15 14 12 27 27 H 1.09000 * 109.60461 * 62.94817 * 15 14 12 28 28 H 1.08991 * 109.52288 * 297.06879 * 16 15 14 29 29 H 1.08997 * 109.57121 * 176.91135 * 16 15 14 30 30 H 1.09001 * 109.47933 * 182.40474 * 17 16 15 31 31 H 1.09003 * 109.49229 * 62.37820 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 3.0611 1.2532 -0.3792 5 6 1.4394 2.3760 0.4926 6 7 0.6068 2.3013 1.4971 7 14 1.8157 4.0311 -0.2875 8 1 1.0487 5.0935 0.4113 9 1 1.4288 4.0021 -1.7209 10 1 3.2691 4.3135 -0.1727 11 6 2.1038 -1.3050 -0.0006 12 6 2.4677 -1.6833 -1.4377 13 1 3.0173 -0.8640 -1.9011 14 6 3.3389 -2.9422 -1.4294 15 6 3.6485 -3.3489 -2.8734 16 6 2.3315 -3.5580 -3.6272 17 6 1.4996 -2.2752 -3.5506 18 8 1.2736 -1.9365 -2.1807 19 1 -0.5400 -0.9305 0.0947 20 1 -0.5401 0.9304 -0.0947 21 1 0.4752 1.4569 1.9562 22 1 3.0145 -1.1990 0.5890 23 1 1.4789 -2.0856 0.4334 24 1 4.2698 -2.7374 -0.9008 25 1 2.8055 -3.7509 -0.9297 26 1 4.2214 -4.2762 -2.8761 27 1 4.2258 -2.5622 -3.3592 28 1 1.7777 -4.3790 -3.1720 29 1 2.5414 -3.7943 -4.6703 30 1 0.5429 -2.4321 -4.0488 31 1 2.0364 -1.4636 -4.0418 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260227232.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:05 Heat of formation + Delta-G solvation = -60.540459 kcal Electronic energy + Delta-G solvation = -12665.717541 eV Core-core repulsion = 10525.335730 eV Total energy + Delta-G solvation = -2140.381811 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.93590 -35.19708 -33.22203 -32.40745 -29.82079 -26.18775 -24.69197 -23.71678 -21.77120 -19.88741 -19.08105 -16.13604 -15.72705 -15.51166 -14.33397 -14.16592 -13.90556 -13.40341 -13.00147 -12.63101 -12.31866 -12.00052 -11.31916 -11.03744 -10.89132 -10.69616 -10.62835 -10.42887 -10.22831 -10.08398 -9.55290 -9.15167 -8.85587 -8.44902 -7.31900 -6.86438 -4.00863 3.26751 3.35474 3.53697 4.15230 4.30831 4.39320 5.00789 5.02230 5.10268 5.28030 5.39941 5.58541 5.73334 5.83417 5.96830 6.06813 6.10210 6.13598 6.22685 6.40840 6.53070 6.64630 6.88820 7.00989 7.70611 7.89802 8.07704 8.15477 8.40831 8.95968 9.28376 9.53494 10.45639 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.051278 B = 0.009351 C = 0.009047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.913841 B = 2993.514222 C = 3094.131143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.403 4.403 2 C 0.046 3.954 3 C -0.564 4.564 4 H 0.057 0.943 5 C 0.053 3.947 6 N -0.803 5.803 7 Si 1.051 2.949 8 H -0.278 1.278 9 H -0.278 1.278 10 H -0.281 1.281 11 C -0.071 4.071 12 C 0.104 3.896 13 H 0.056 0.944 14 C -0.152 4.152 15 C -0.121 4.121 16 C -0.155 4.155 17 C 0.058 3.942 18 O -0.360 6.360 19 H 0.046 0.954 20 H 0.069 0.931 21 H 0.296 0.704 22 H 0.064 0.936 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.562 -7.657 -7.422 12.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 C 0.044 3.956 3 C -0.593 4.593 4 H 0.075 0.925 5 C -0.169 4.169 6 N -0.427 5.427 7 Si 0.876 3.124 8 H -0.204 1.204 9 H -0.204 1.204 10 H -0.207 1.207 11 C -0.109 4.109 12 C 0.046 3.954 13 H 0.074 0.926 14 C -0.190 4.190 15 C -0.158 4.158 16 C -0.193 4.193 17 C -0.019 4.019 18 O -0.279 6.279 19 H 0.064 0.936 20 H 0.087 0.913 21 H 0.108 0.892 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.963 -6.055 -7.226 10.654 hybrid contribution 0.666 -1.755 -0.263 1.896 sum 5.629 -7.810 -7.489 12.197 Atomic orbital electron populations 1.22937 0.94275 0.97089 1.30034 1.18304 0.93097 0.90846 0.93382 1.19929 1.01860 0.94647 1.42869 0.92485 1.26656 0.92509 1.04099 0.93634 1.70338 1.27710 1.31997 1.12611 0.83895 0.76665 0.74833 0.77024 1.20355 1.20419 1.20693 1.20694 0.99745 0.97992 0.92443 1.22037 0.85526 0.94058 0.93761 0.92609 1.22290 1.00580 0.99642 0.96478 1.21576 0.97008 1.01100 0.96159 1.22196 0.97205 0.99583 1.00288 1.22470 0.99661 0.94719 0.85054 1.88102 1.30294 1.89255 1.20199 0.93559 0.91293 0.89178 0.91724 0.92953 0.91288 0.91530 0.92149 0.92046 0.91439 0.91601 0.89600 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.40 -11.75 12.44 29.59 0.37 -11.38 16 2 C 0.05 1.27 4.46 -105.07 -0.47 0.80 16 3 C -0.56 -16.15 8.88 -38.11 -0.34 -16.49 16 4 H 0.06 1.59 8.03 -52.49 -0.42 1.17 16 5 C 0.05 1.49 4.61 -17.26 -0.08 1.41 16 6 N -0.80 -23.52 12.51 55.57 0.70 -22.83 16 7 Si 1.05 23.92 30.05 -169.99 -5.11 18.82 16 8 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 11 C -0.07 -1.65 5.05 -27.89 -0.14 -1.79 16 12 C 0.10 2.09 2.63 -26.68 -0.07 2.02 16 13 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.15 -2.39 5.42 -26.59 -0.14 -2.54 16 15 C -0.12 -1.60 6.03 -26.55 -0.16 -1.76 16 16 C -0.15 -2.03 6.14 -26.59 -0.16 -2.20 16 17 C 0.06 0.93 6.84 37.20 0.25 1.19 16 18 O -0.36 -7.56 10.08 -35.23 -0.36 -7.92 16 19 H 0.05 1.31 8.02 -52.49 -0.42 0.88 16 20 H 0.07 2.15 6.78 -52.49 -0.36 1.79 16 21 H 0.30 8.83 7.39 -40.82 -0.30 8.53 16 22 H 0.06 1.41 8.12 -51.93 -0.42 0.99 16 23 H 0.05 1.18 8.02 -51.93 -0.42 0.77 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 256.10 15.07 3.86 3.86 Total: -1.00 -30.72 256.10 -6.79 -37.51 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.94 Total: 1.29 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: -0.94 Total: -30.73 kcal Atomic # 7 Polarization: -23.52 SS G_CDS: 0.70 Total: -22.83 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.36 Total: -7.92 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.11 Total: 18.82 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.72 -6.79 -37.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227232.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.029 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds