Wall clock time and date at job start Mon Mar 30 2020 02:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35025 * 1 3 3 C 1.40080 * 120.00014 * 2 1 4 4 H 1.07998 * 119.99719 * 203.91843 * 3 2 1 5 5 C 1.40307 * 119.99611 * 23.91443 * 3 2 1 6 6 N 1.30686 * 120.00392 * 34.51018 * 5 3 2 7 7 Si 1.86802 * 119.99899 * 214.50808 * 5 3 2 8 8 H 1.48500 * 109.47218 * 180.02562 * 7 5 3 9 9 H 1.48498 * 109.47080 * 60.00022 * 7 5 3 10 10 H 1.48507 * 109.47136 * 300.00317 * 7 5 3 11 11 C 1.50698 * 120.00366 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47318 * 94.99588 * 11 2 1 13 13 H 1.09002 * 109.47805 * 55.00477 * 12 11 2 14 14 C 1.53096 * 109.48213 * 175.02233 * 12 11 2 15 15 C 1.53178 * 109.16455 * 177.58216 * 14 12 11 16 16 C 1.53182 * 109.04344 * 303.03855 * 15 14 12 17 17 C 1.53086 * 109.16293 * 56.97522 * 16 15 14 18 18 O 1.42897 * 109.48272 * 294.97943 * 12 11 2 19 19 H 1.08000 * 119.99966 * 185.81182 * 1 2 3 20 20 H 1.07999 * 120.00507 * 5.81044 * 1 2 3 21 21 H 0.97007 * 119.99520 * 5.78469 * 6 5 3 22 22 H 1.09004 * 109.46933 * 215.00226 * 11 2 1 23 23 H 1.09004 * 109.47093 * 335.00015 * 11 2 1 24 24 H 1.08999 * 109.52311 * 297.50456 * 14 12 11 25 25 H 1.09005 * 109.51994 * 57.68460 * 14 12 11 26 26 H 1.08995 * 109.54461 * 183.16665 * 15 14 12 27 27 H 1.09000 * 109.60461 * 62.94817 * 15 14 12 28 28 H 1.08991 * 109.52288 * 297.06879 * 16 15 14 29 29 H 1.08997 * 109.57121 * 176.91135 * 16 15 14 30 30 H 1.09001 * 109.47933 * 182.40474 * 17 16 15 31 31 H 1.09003 * 109.49229 * 62.37820 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 3.0611 1.2532 -0.3792 5 6 1.4394 2.3760 0.4926 6 7 0.6068 2.3013 1.4971 7 14 1.8157 4.0311 -0.2875 8 1 1.0487 5.0935 0.4113 9 1 1.4288 4.0021 -1.7209 10 1 3.2691 4.3135 -0.1727 11 6 2.1038 -1.3050 -0.0006 12 6 2.4677 -1.6833 -1.4377 13 1 3.0173 -0.8640 -1.9011 14 6 3.3389 -2.9422 -1.4294 15 6 3.6485 -3.3489 -2.8734 16 6 2.3315 -3.5580 -3.6272 17 6 1.4996 -2.2752 -3.5506 18 8 1.2736 -1.9365 -2.1807 19 1 -0.5400 -0.9305 0.0947 20 1 -0.5401 0.9304 -0.0947 21 1 0.4752 1.4569 1.9562 22 1 3.0145 -1.1990 0.5890 23 1 1.4789 -2.0856 0.4334 24 1 4.2698 -2.7374 -0.9008 25 1 2.8055 -3.7509 -0.9297 26 1 4.2214 -4.2762 -2.8761 27 1 4.2258 -2.5622 -3.3592 28 1 1.7777 -4.3790 -3.1720 29 1 2.5414 -3.7943 -4.6703 30 1 0.5429 -2.4321 -4.0488 31 1 2.0364 -1.4636 -4.0418 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260227232.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:05 Heat of formation + Delta-G solvation = -79.175375 kcal Electronic energy + Delta-G solvation = -12666.525612 eV Core-core repulsion = 10525.335730 eV Total energy + Delta-G solvation = -2141.189881 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.34999 -37.28019 -34.48522 -34.24084 -31.56028 -27.84861 -26.94304 -25.02901 -23.30282 -21.34416 -21.01109 -18.25274 -17.24121 -16.84280 -15.93194 -15.52022 -15.40932 -15.16991 -15.07757 -14.26592 -13.61568 -13.42408 -13.10464 -12.80250 -12.59877 -12.24874 -12.05106 -11.97301 -11.88003 -11.59579 -11.31575 -11.16487 -10.65112 -10.23280 -9.53368 -9.13687 -6.32591 1.40523 1.49495 1.77446 2.05778 2.38437 2.95989 3.13584 3.88463 3.92142 3.96291 4.07076 4.25173 4.46875 4.55782 4.62969 4.74146 4.80746 4.92240 4.95943 5.05394 5.09838 5.14587 5.22228 5.36826 5.41155 5.77665 5.80334 6.06133 6.47720 6.72959 7.02431 7.31563 8.15902 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.051278 B = 0.009351 C = 0.009047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.913841 B = 2993.514222 C = 3094.131143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.430 4.430 2 C 0.045 3.955 3 C -0.588 4.588 4 H 0.063 0.937 5 C 0.009 3.991 6 N -0.817 5.817 7 Si 1.106 2.894 8 H -0.273 1.273 9 H -0.272 1.272 10 H -0.251 1.251 11 C -0.072 4.072 12 C 0.108 3.892 13 H 0.040 0.960 14 C -0.145 4.145 15 C -0.119 4.119 16 C -0.148 4.148 17 C 0.047 3.953 18 O -0.398 6.398 19 H 0.044 0.956 20 H 0.039 0.961 21 H 0.280 0.720 22 H 0.075 0.925 23 H 0.050 0.950 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.356 -8.022 -8.799 13.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.470 4.470 2 C 0.043 3.957 3 C -0.617 4.617 4 H 0.081 0.919 5 C -0.208 4.208 6 N -0.439 5.439 7 Si 0.923 3.077 8 H -0.198 1.198 9 H -0.197 1.197 10 H -0.175 1.175 11 C -0.109 4.109 12 C 0.050 3.950 13 H 0.058 0.942 14 C -0.183 4.183 15 C -0.156 4.156 16 C -0.185 4.185 17 C -0.030 4.030 18 O -0.318 6.318 19 H 0.063 0.937 20 H 0.058 0.942 21 H 0.091 0.909 22 H 0.093 0.907 23 H 0.069 0.931 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.764 -6.452 -8.600 12.701 hybrid contribution 0.082 -1.646 0.178 1.657 sum 6.845 -8.097 -8.422 13.541 Atomic orbital electron populations 1.22667 0.94924 0.95575 1.33855 1.18747 0.92996 0.93089 0.90847 1.20268 1.02397 0.95621 1.43376 0.91886 1.28307 0.91265 1.08233 0.92978 1.70468 1.28659 1.31108 1.13707 0.83203 0.78285 0.70071 0.76106 1.19805 1.19689 1.17542 1.20687 0.99432 0.95453 0.95334 1.21889 0.85847 0.95929 0.91329 0.94213 1.22207 1.00018 0.97157 0.98873 1.21605 0.97379 1.02562 0.94052 1.22151 0.96523 0.97598 1.02242 1.22773 1.01140 0.96418 0.82648 1.88035 1.31242 1.89797 1.22713 0.93693 0.94189 0.90859 0.90672 0.93125 0.89985 0.91403 0.89272 0.91647 0.91397 0.88551 0.88534 0.93750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.43 -26.09 12.44 67.08 0.83 -25.26 16 2 C 0.05 2.57 4.46 -20.16 -0.09 2.48 16 3 C -0.59 -33.94 8.88 23.22 0.21 -33.73 16 4 H 0.06 3.50 8.03 -2.91 -0.02 3.47 16 5 C 0.01 0.53 4.61 85.37 0.39 0.92 16 6 N -0.82 -48.71 12.51 21.89 0.27 -48.44 16 7 Si 1.11 47.41 30.05 68.60 2.06 49.47 16 8 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 9 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 10 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 11 C -0.07 -3.33 5.05 29.85 0.15 -3.18 16 12 C 0.11 4.27 2.63 30.63 0.08 4.35 16 13 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 14 C -0.14 -4.23 5.42 30.69 0.17 -4.06 16 15 C -0.12 -2.72 6.03 30.71 0.19 -2.54 16 16 C -0.15 -3.41 6.14 30.68 0.19 -3.22 16 17 C 0.05 1.43 6.84 72.01 0.49 1.92 16 18 O -0.40 -16.70 10.08 -148.98 -1.50 -18.20 16 19 H 0.04 2.65 8.02 -2.91 -0.02 2.63 16 20 H 0.04 2.60 6.78 -2.91 -0.02 2.58 16 21 H 0.28 17.34 7.39 -92.70 -0.69 16.65 16 22 H 0.07 3.25 8.12 -2.38 -0.02 3.24 16 23 H 0.05 2.32 8.02 -2.38 -0.02 2.30 16 24 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.07 1.96 8.14 -2.38 -0.02 1.95 16 26 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -67.48 256.10 4.60 -62.88 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 1.16 Total: 16.58 kcal Atomic # 6 Polarization: -64.91 SS G_CDS: 2.61 Total: -62.30 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.27 Total: -48.44 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -1.50 Total: -18.20 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.06 Total: 49.47 kcal Total: -67.48 4.60 -62.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227232.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.292 kcal (2) G-P(sol) polarization free energy of solvation -67.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds