Wall clock time and date at job start Mon Mar 30 2020 02:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00068 * 2 1 4 4 H 1.48496 * 109.47247 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47033 * 299.99502 * 3 2 1 6 6 H 1.48497 * 109.47217 * 59.99210 * 3 2 1 7 7 C 1.37876 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00524 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99983 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.45274 * 59.29393 * 9 7 2 11 11 C 1.55918 * 110.62464 * 296.62482 * 9 7 2 12 12 C 1.56243 * 105.86984 * 234.70879 * 11 9 7 13 13 C 1.51737 * 101.92026 * 334.74987 * 12 11 9 14 14 H 1.08998 * 111.64394 * 288.10251 * 13 12 11 15 15 C 1.51737 * 122.51333 * 153.03412 * 13 12 11 16 16 C 1.56249 * 101.91675 * 206.96621 * 15 13 12 17 17 C 1.55918 * 105.87078 * 25.24763 * 16 15 13 18 18 C 1.49965 * 104.08283 * 6.58443 * 17 16 15 19 19 H 1.09004 * 108.50056 * 77.61047 * 18 17 16 20 20 H 0.97000 * 120.00159 * 0.02562 * 1 2 3 21 21 H 0.96700 * 114.00311 * 302.59950 * 10 9 7 22 22 H 1.08995 * 110.16925 * 353.81210 * 11 9 7 23 23 H 1.09007 * 110.16969 * 115.60909 * 11 9 7 24 24 H 1.09005 * 110.94399 * 216.59418 * 12 11 9 25 25 H 1.09000 * 110.93970 * 92.90923 * 12 11 9 26 26 H 1.08996 * 110.94583 * 88.80734 * 15 13 12 27 27 H 1.09003 * 110.97028 * 325.12980 * 15 13 12 28 28 H 1.09001 * 110.16875 * 266.14425 * 16 15 13 29 29 H 1.09002 * 110.23415 * 144.38469 * 16 15 13 30 30 H 1.08997 * 110.50664 * 247.93120 * 17 16 15 31 31 H 1.09001 * 110.62280 * 125.29090 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.4098 -2.5900 -1.1510 11 6 0.4097 -2.6475 1.3048 12 6 0.8411 -4.0087 1.9390 13 6 1.3321 -4.7777 0.7266 14 1 0.5073 -5.0813 0.0820 15 6 2.3748 -5.8758 0.8247 16 6 3.0248 -5.8312 -0.5955 17 6 2.7974 -4.3817 -1.1232 18 6 2.2042 -3.6561 0.0475 19 1 3.0045 -3.4165 0.7477 20 1 -0.4850 0.8400 -0.0004 21 1 -0.2267 -1.8664 -1.2313 22 1 0.6290 -1.8278 1.9888 23 1 -0.6538 -2.6644 1.0660 24 1 -0.0094 -4.5105 2.4004 25 1 1.6451 -3.8647 2.6608 26 1 1.9063 -6.8426 1.0085 27 1 3.1097 -5.6480 1.5968 28 1 2.5391 -6.5514 -1.2539 29 1 4.0918 -6.0438 -0.5286 30 1 2.1020 -4.3856 -1.9624 31 1 3.7439 -3.9265 -1.4149 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260312203.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:38 Heat of formation + Delta-G solvation = -65.454837 kcal Electronic energy + Delta-G solvation = -13235.666066 eV Core-core repulsion = 11095.071152 eV Total energy + Delta-G solvation = -2140.594914 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.29188 -35.10134 -32.13113 -31.98980 -28.91871 -26.04604 -25.75519 -23.13647 -20.03961 -19.35797 -18.41749 -16.78540 -15.18872 -14.58793 -14.35913 -13.89636 -13.56644 -12.84074 -12.27573 -11.96329 -11.58956 -11.39198 -11.21157 -10.84797 -10.62768 -10.42146 -10.39782 -10.09578 -10.01422 -9.66698 -9.50449 -9.25961 -8.78966 -8.46165 -7.94438 -6.12225 -4.19611 3.25000 3.33610 3.38138 4.37003 4.98139 5.16488 5.37167 5.41757 5.85875 5.95186 6.05321 6.13714 6.16422 6.27927 6.40599 6.43524 6.50500 6.55154 6.75667 6.76920 6.94321 7.01068 7.13064 7.26203 7.37049 7.66396 7.73156 7.93794 8.29469 8.83689 9.48860 9.65696 10.94248 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.050323 B = 0.012447 C = 0.011576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.276764 B = 2249.030877 C = 2418.143588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.264 3.736 10 O -0.589 6.589 11 C -0.118 4.118 12 C -0.112 4.112 13 C -0.119 4.119 14 H 0.074 0.926 15 C -0.110 4.110 16 C -0.122 4.122 17 C -0.100 4.100 18 C -0.076 4.076 19 H 0.059 0.941 20 H 0.265 0.735 21 H 0.378 0.622 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.537 -6.913 1.392 7.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.569 4.569 8 H 0.077 0.923 9 C 0.224 3.776 10 O -0.398 6.398 11 C -0.156 4.156 12 C -0.150 4.150 13 C -0.138 4.138 14 H 0.093 0.907 15 C -0.147 4.147 16 C -0.160 4.160 17 C -0.137 4.137 18 C -0.095 4.095 19 H 0.078 0.922 20 H 0.075 0.925 21 H 0.228 0.772 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.752 -7.333 1.299 7.940 hybrid contribution 0.095 1.550 0.211 1.567 sum 2.847 -5.783 1.510 6.621 Atomic orbital electron populations 1.69683 1.05869 1.27086 1.51180 1.25021 0.94949 0.99292 0.94133 0.86497 0.80221 0.83439 0.77591 1.19750 1.20912 1.20987 1.21818 0.93540 0.91067 1.50488 0.92265 1.18480 0.85965 0.90880 0.82241 1.86110 1.53331 1.52655 1.47673 1.23464 0.99386 0.93651 0.99118 1.21992 0.99189 0.97584 0.96238 1.22395 0.97668 0.95357 0.98343 0.90748 1.21945 0.97940 0.98047 0.96809 1.22942 0.99406 0.97581 0.96082 1.21263 1.00059 0.93549 0.98868 1.21552 0.96808 0.94722 0.96416 0.92216 0.92537 0.77224 0.92056 0.93141 0.93596 0.92661 0.92809 0.92088 0.92512 0.92739 0.91390 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.56 10.97 55.43 0.61 -23.95 16 2 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.53 -14.58 8.02 -34.44 -0.28 -14.85 16 8 H 0.06 1.63 7.75 -52.49 -0.41 1.23 16 9 C 0.26 6.67 0.79 -91.72 -0.07 6.60 16 10 O -0.59 -15.62 12.57 -35.23 -0.44 -16.06 16 11 C -0.12 -2.80 5.53 -23.43 -0.13 -2.93 16 12 C -0.11 -2.22 6.60 -25.63 -0.17 -2.39 16 13 C -0.12 -2.31 2.98 -89.46 -0.27 -2.58 16 14 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 15 C -0.11 -1.77 6.60 -25.63 -0.17 -1.94 16 16 C -0.12 -1.95 6.94 -23.43 -0.16 -2.11 16 17 C -0.10 -1.95 6.60 -26.68 -0.18 -2.13 16 18 C -0.08 -1.68 1.72 -91.19 -0.16 -1.84 16 19 H 0.06 1.34 7.75 -51.93 -0.40 0.93 16 20 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 21 H 0.38 10.26 7.17 45.56 0.33 10.59 16 22 H 0.06 1.56 7.63 -51.93 -0.40 1.16 16 23 H 0.05 1.23 8.01 -51.93 -0.42 0.82 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.41 7.81 -51.93 -0.41 1.00 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 244.88 15.07 3.69 3.69 Total: -1.00 -27.48 244.88 -7.05 -34.53 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -4.22 Total: 8.17 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -1.67 Total: -22.44 kcal Atomic # 7 Polarization: -24.56 SS G_CDS: 0.61 Total: -23.95 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.44 Total: -16.06 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -27.48 -7.05 -34.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312203.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.924 kcal (2) G-P(sol) polarization free energy of solvation -27.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds