Wall clock time and date at job start Mon Mar 30 2020 02:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00068 * 2 1 4 4 H 1.48496 * 109.47247 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47033 * 299.99502 * 3 2 1 6 6 H 1.48497 * 109.47217 * 59.99210 * 3 2 1 7 7 C 1.37876 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00524 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99983 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.45274 * 59.29393 * 9 7 2 11 11 C 1.55918 * 110.62464 * 296.62482 * 9 7 2 12 12 C 1.56243 * 105.86984 * 234.70879 * 11 9 7 13 13 C 1.51737 * 101.92026 * 334.74987 * 12 11 9 14 14 H 1.08998 * 111.64394 * 288.10251 * 13 12 11 15 15 C 1.51737 * 122.51333 * 153.03412 * 13 12 11 16 16 C 1.56249 * 101.91675 * 206.96621 * 15 13 12 17 17 C 1.55918 * 105.87078 * 25.24763 * 16 15 13 18 18 C 1.49965 * 104.08283 * 6.58443 * 17 16 15 19 19 H 1.09004 * 108.50056 * 77.61047 * 18 17 16 20 20 H 0.97000 * 120.00159 * 0.02562 * 1 2 3 21 21 H 0.96700 * 114.00311 * 302.59950 * 10 9 7 22 22 H 1.08995 * 110.16925 * 353.81210 * 11 9 7 23 23 H 1.09007 * 110.16969 * 115.60909 * 11 9 7 24 24 H 1.09005 * 110.94399 * 216.59418 * 12 11 9 25 25 H 1.09000 * 110.93970 * 92.90923 * 12 11 9 26 26 H 1.08996 * 110.94583 * 88.80734 * 15 13 12 27 27 H 1.09003 * 110.97028 * 325.12980 * 15 13 12 28 28 H 1.09001 * 110.16875 * 266.14425 * 16 15 13 29 29 H 1.09002 * 110.23415 * 144.38469 * 16 15 13 30 30 H 1.08997 * 110.50664 * 247.93120 * 17 16 15 31 31 H 1.09001 * 110.62280 * 125.29090 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.4098 -2.5900 -1.1510 11 6 0.4097 -2.6475 1.3048 12 6 0.8411 -4.0087 1.9390 13 6 1.3321 -4.7777 0.7266 14 1 0.5073 -5.0813 0.0820 15 6 2.3748 -5.8758 0.8247 16 6 3.0248 -5.8312 -0.5955 17 6 2.7974 -4.3817 -1.1232 18 6 2.2042 -3.6561 0.0475 19 1 3.0045 -3.4165 0.7477 20 1 -0.4850 0.8400 -0.0004 21 1 -0.2267 -1.8664 -1.2313 22 1 0.6290 -1.8278 1.9888 23 1 -0.6538 -2.6644 1.0660 24 1 -0.0094 -4.5105 2.4004 25 1 1.6451 -3.8647 2.6608 26 1 1.9063 -6.8426 1.0085 27 1 3.1097 -5.6480 1.5968 28 1 2.5391 -6.5514 -1.2539 29 1 4.0918 -6.0438 -0.5286 30 1 2.1020 -4.3856 -1.9624 31 1 3.7439 -3.9265 -1.4149 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260312203.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:38 Heat of formation + Delta-G solvation = -82.416043 kcal Electronic energy + Delta-G solvation = -13236.401559 eV Core-core repulsion = 11095.071152 eV Total energy + Delta-G solvation = -2141.330407 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.95767 -36.94981 -34.11912 -33.81002 -30.60791 -27.88188 -27.36287 -24.98401 -21.64503 -20.90823 -20.18696 -18.81533 -17.13503 -16.33225 -16.00124 -15.50919 -15.36723 -14.67250 -13.93662 -13.62423 -13.31054 -13.23813 -13.00595 -12.67521 -12.41638 -12.27515 -11.96566 -11.75329 -11.62008 -11.28455 -11.13390 -10.96895 -10.72735 -10.37017 -9.98645 -8.19245 -6.34754 1.36492 1.39460 1.50275 2.38368 3.05157 3.45701 3.95091 3.99169 4.23357 4.43514 4.45395 4.52923 4.68274 4.80585 4.86439 4.94989 4.95897 5.06905 5.13748 5.25793 5.34286 5.35434 5.46580 5.63347 5.64953 5.69110 5.79602 5.98574 6.24899 6.72458 7.37090 7.52143 8.85487 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.050323 B = 0.012447 C = 0.011576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.276764 B = 2249.030877 C = 2418.143588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.557 4.557 8 H 0.049 0.951 9 C 0.246 3.754 10 O -0.596 6.596 11 C -0.114 4.114 12 C -0.104 4.104 13 C -0.108 4.108 14 H 0.060 0.940 15 C -0.102 4.102 16 C -0.112 4.112 17 C -0.104 4.104 18 C -0.089 4.089 19 H 0.053 0.947 20 H 0.267 0.733 21 H 0.370 0.630 22 H 0.035 0.965 23 H 0.032 0.968 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.483 -8.171 1.964 9.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.595 4.595 8 H 0.067 0.933 9 C 0.207 3.793 10 O -0.404 6.404 11 C -0.153 4.153 12 C -0.141 4.141 13 C -0.127 4.127 14 H 0.079 0.921 15 C -0.139 4.139 16 C -0.150 4.150 17 C -0.141 4.141 18 C -0.108 4.108 19 H 0.071 0.929 20 H 0.077 0.923 21 H 0.219 0.781 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.702 -8.605 1.873 9.553 hybrid contribution -0.233 1.993 0.009 2.007 sum 3.469 -6.611 1.882 7.700 Atomic orbital electron populations 1.69769 1.06824 1.27883 1.51086 1.25717 0.95807 1.02237 0.93683 0.85554 0.78967 0.79630 0.77741 1.19618 1.20476 1.20317 1.22086 0.93306 0.92746 1.51362 0.93295 1.18774 0.86592 0.91722 0.82217 1.86108 1.53339 1.52205 1.48721 1.23310 0.98093 0.95478 0.98378 1.21925 1.00436 0.95145 0.96586 1.22358 0.97562 0.95607 0.97126 0.92150 1.21950 0.96953 0.97878 0.97168 1.22890 1.01216 0.94855 0.96031 1.21306 0.99242 0.96113 0.97459 1.21549 0.96588 0.94725 0.97900 0.92874 0.92315 0.78139 0.94624 0.94875 0.91337 0.91446 0.90040 0.91014 0.90953 0.90361 0.93348 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.00 10.97 21.45 0.24 -50.76 16 2 C 0.03 1.38 5.15 84.65 0.44 1.82 16 3 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.56 -31.22 8.02 25.60 0.21 -31.02 16 8 H 0.05 2.76 7.75 -2.91 -0.02 2.74 16 9 C 0.25 12.68 0.79 -11.50 -0.01 12.67 16 10 O -0.60 -32.50 12.57 -148.98 -1.87 -34.37 16 11 C -0.11 -5.51 5.53 32.73 0.18 -5.33 16 12 C -0.10 -3.93 6.60 31.31 0.21 -3.73 16 13 C -0.11 -3.98 2.98 -10.04 -0.03 -4.01 16 14 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 15 C -0.10 -2.89 6.60 31.31 0.21 -2.69 16 16 C -0.11 -3.19 6.94 32.73 0.23 -2.96 16 17 C -0.10 -3.94 6.60 30.63 0.20 -3.74 16 18 C -0.09 -3.87 1.72 -11.16 -0.02 -3.89 16 19 H 0.05 2.35 7.75 -2.39 -0.02 2.33 16 20 H 0.27 14.13 8.31 -92.71 -0.77 13.35 16 21 H 0.37 20.86 7.17 -74.06 -0.53 20.33 16 22 H 0.03 1.85 7.63 -2.39 -0.02 1.83 16 23 H 0.03 1.65 8.01 -2.38 -0.02 1.64 16 24 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 25 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.99 7.81 -2.39 -0.02 1.98 16 31 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -59.24 244.88 2.56 -56.68 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.57 Total: 25.73 kcal Atomic # 6 Polarization: -44.49 SS G_CDS: 1.61 Total: -42.89 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.24 Total: -50.76 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -1.87 Total: -34.37 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -59.24 2.56 -56.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312203.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.738 kcal (2) G-P(sol) polarization free energy of solvation -59.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds