Wall clock time and date at job start Mon Mar 30 2020 01:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.40451 * 126.82421 * 2 1 4 4 C 1.30710 * 106.79314 * 180.02562 * 3 2 1 5 5 N 1.33240 * 108.94809 * 359.76115 * 4 3 2 6 6 C 1.30834 * 109.82906 * 0.40277 * 5 4 3 7 7 C 1.50695 * 125.96254 * 179.86884 * 6 5 4 8 8 H 1.09000 * 109.47521 * 194.68820 * 7 6 5 9 9 N 1.46908 * 109.47079 * 314.68855 * 7 6 5 10 10 C 1.52996 * 109.47310 * 74.68590 * 7 6 5 11 11 C 1.50702 * 109.47159 * 174.99934 * 10 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 7 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 7 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 H 1.09001 * 109.47361 * 269.95850 * 1 2 3 20 20 H 1.09003 * 109.47193 * 29.96540 * 1 2 3 21 21 H 1.09007 * 109.47125 * 149.96225 * 1 2 3 22 22 H 1.07996 * 125.52645 * 180.02562 * 4 3 2 23 23 H 1.00902 * 111.00072 * 59.99841 * 9 7 6 24 24 H 1.00901 * 110.99845 * 183.95568 * 9 7 6 25 25 H 1.09004 * 109.47066 * 55.00137 * 10 7 6 26 26 H 1.08994 * 109.47405 * 294.99967 * 10 7 6 27 27 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 -0.0006 5 7 3.5096 -0.6556 0.0043 6 6 2.2707 -1.0761 -0.0006 7 6 1.8247 -2.5155 -0.0002 8 1 0.7688 -2.5689 -0.2655 9 7 2.6146 -3.2731 -0.9802 10 6 2.0313 -3.1132 1.3929 11 6 1.4730 -4.5126 1.4270 12 1 1.0168 -4.9337 0.5433 13 6 1.5502 -5.2576 2.5847 14 7 1.0679 -6.4807 2.6129 15 14 2.3399 -4.5294 4.1130 16 1 1.3054 -3.8367 4.9225 17 1 2.9534 -5.6157 4.9185 18 1 3.3886 -3.5571 3.7130 19 1 -0.3634 -0.0007 1.0277 20 1 -0.3634 0.8903 -0.5133 21 1 -0.3634 -0.8897 -0.5145 22 1 4.4254 1.2874 -0.0003 23 1 3.5978 -3.2390 -0.7561 24 1 2.2914 -4.2268 -1.0454 25 1 1.5170 -2.4987 2.1318 26 1 3.0966 -3.1414 1.6218 27 1 1.1219 -7.0047 3.4274 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260386069.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:40 Heat of formation + Delta-G solvation = 59.568341 kcal Electronic energy + Delta-G solvation = -12292.386111 eV Core-core repulsion = 10085.965017 eV Total energy + Delta-G solvation = -2206.421094 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.05881 -37.47987 -34.95610 -34.52239 -31.80005 -30.54120 -28.29195 -26.48011 -23.37479 -22.85534 -20.77250 -19.25506 -17.98584 -17.02436 -16.47880 -16.14339 -15.56184 -15.40502 -15.05233 -14.26963 -14.11645 -13.97897 -13.85740 -12.97862 -12.86767 -12.54185 -12.24052 -11.84861 -11.43739 -10.99982 -10.82055 -10.69734 -10.53544 -9.57036 -8.33015 -6.36955 0.61551 1.29814 1.34924 1.41241 1.44390 1.99632 2.30926 3.02029 3.19808 3.59285 3.80357 3.98310 4.23704 4.38317 4.48849 4.59970 4.69750 5.00450 5.23002 5.35321 5.49714 5.55625 5.80526 6.17075 6.23044 6.62160 6.70087 7.15349 7.28506 8.81785 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.044271 B = 0.010498 C = 0.010124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.322295 B = 2666.578486 C = 2765.030409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.382 5.382 3 N -0.348 5.348 4 C 0.190 3.810 5 N -0.566 5.566 6 C 0.290 3.710 7 C 0.187 3.813 8 H 0.103 0.897 9 N -0.825 5.825 10 C -0.024 4.024 11 C -0.522 4.522 12 H 0.058 0.942 13 C 0.022 3.978 14 N -0.937 5.937 15 Si 0.933 3.067 16 H -0.269 1.269 17 H -0.283 1.283 18 H -0.262 1.262 19 H 0.089 0.911 20 H 0.110 0.890 21 H 0.107 0.893 22 H 0.249 0.751 23 H 0.345 0.655 24 H 0.356 0.644 25 H 0.012 0.988 26 H 0.017 0.983 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.310 11.827 -3.663 12.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.172 5.172 3 N -0.177 5.177 4 C -0.112 4.112 5 N -0.295 5.295 6 C 0.013 3.987 7 C 0.072 3.928 8 H 0.121 0.879 9 N -0.355 5.355 10 C -0.065 4.065 11 C -0.560 4.560 12 H 0.076 0.924 13 C -0.177 4.177 14 N -0.577 5.577 15 Si 0.758 3.242 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.186 1.186 19 H 0.108 0.892 20 H 0.128 0.872 21 H 0.125 0.875 22 H 0.265 0.735 23 H 0.157 0.843 24 H 0.171 0.829 25 H 0.030 0.970 26 H 0.036 0.964 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.022 12.774 -4.103 13.416 hybrid contribution 0.380 -0.780 1.719 1.926 sum 0.358 11.993 -2.383 12.233 Atomic orbital electron populations 1.22327 0.71813 1.06420 1.05148 1.50468 1.09236 1.03296 1.54210 1.77881 1.02626 1.08885 1.28315 1.26635 0.96664 0.90344 0.97542 1.70396 1.20502 1.12304 1.26266 1.24532 0.86508 0.92996 0.94657 1.19689 0.98238 0.82364 0.92497 0.87936 1.58997 1.08012 1.19351 1.49181 1.20140 0.96861 0.95404 0.94069 1.21173 1.38416 0.97818 0.98621 0.92393 1.25695 0.95390 0.94897 1.01732 1.70003 1.47552 1.10782 1.29346 0.85918 0.79663 0.78507 0.80072 1.19457 1.20867 1.18615 0.89222 0.87168 0.87472 0.73500 0.84300 0.82932 0.96967 0.96449 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.85 11.29 127.77 1.44 3.29 15 2 N -0.38 -12.16 4.04 -359.88 -1.45 -13.61 15 3 N -0.35 -11.24 12.70 -61.25 -0.78 -12.02 15 4 C 0.19 5.87 13.03 180.77 2.36 8.23 15 5 N -0.57 -20.75 11.05 -191.79 -2.12 -22.87 15 6 C 0.29 10.50 6.81 138.22 0.94 11.45 15 7 C 0.19 6.99 3.13 44.16 0.14 7.13 15 8 H 0.10 3.57 6.81 -2.39 -0.02 3.55 15 9 N -0.82 -29.79 9.18 -171.80 -1.58 -31.36 15 10 C -0.02 -1.09 3.67 29.85 0.11 -0.98 15 11 C -0.52 -27.23 9.10 25.60 0.23 -26.99 15 12 H 0.06 3.19 7.39 -2.91 -0.02 3.17 15 13 C 0.02 1.19 5.47 84.66 0.46 1.66 15 14 N -0.94 -55.24 13.96 21.45 0.30 -54.94 15 15 Si 0.93 43.32 27.47 68.60 1.88 45.20 15 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 17 H -0.28 -12.94 7.11 99.48 0.71 -12.23 15 18 H -0.26 -11.93 6.54 99.48 0.65 -11.28 15 19 H 0.09 1.81 8.14 -2.39 -0.02 1.79 15 20 H 0.11 1.93 8.14 -2.39 -0.02 1.91 15 21 H 0.11 2.09 6.98 -2.38 -0.02 2.07 15 22 H 0.25 5.20 8.06 -2.91 -0.02 5.18 15 23 H 0.34 12.62 8.87 -89.69 -0.80 11.82 15 24 H 0.36 13.07 7.90 -89.69 -0.71 12.36 15 25 H 0.01 0.54 7.58 -2.38 -0.02 0.52 15 26 H 0.02 0.82 7.19 -2.39 -0.02 0.80 15 27 H 0.27 14.86 8.31 -92.71 -0.77 14.09 15 Total: -1.00 -65.04 237.01 1.58 -63.46 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -0.36 Total: 22.37 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 5.68 Total: 3.77 kcal Atomic # 7 Polarization: -129.18 SS G_CDS: -5.63 Total: -134.80 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.20 kcal Total: -65.04 1.58 -63.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260386069.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.029 kcal (2) G-P(sol) polarization free energy of solvation -65.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds