Wall clock time and date at job start Mon Mar 30 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00450 * 2 1 4 4 H 1.48493 * 109.47459 * 269.99906 * 3 2 1 5 5 H 1.48502 * 109.47268 * 30.00165 * 3 2 1 6 6 H 1.48505 * 109.47360 * 149.99664 * 3 2 1 7 7 C 1.37879 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00650 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99909 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47354 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.46802 * 304.99513 * 10 9 7 12 12 C 1.52995 * 109.47048 * 64.99566 * 10 9 7 13 13 C 1.53002 * 117.50076 * 248.62307 * 12 10 9 14 14 C 1.52996 * 59.99938 * 252.51275 * 13 12 10 15 15 C 1.52995 * 109.47284 * 184.99976 * 10 9 7 16 16 C 1.53365 * 114.56665 * 59.99527 * 15 10 9 17 17 O 1.43355 * 88.44735 * 139.58136 * 16 15 10 18 18 C 1.43354 * 88.31830 * 331.85044 * 17 16 15 19 19 H 0.97003 * 119.99446 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47395 * 59.99565 * 9 7 2 21 21 H 1.09002 * 109.46828 * 299.99826 * 9 7 2 22 22 H 1.08999 * 115.55157 * 34.33441 * 12 10 9 23 23 H 1.08995 * 117.49516 * 0.02562 * 13 12 10 24 24 H 1.08996 * 117.49516 * 145.02574 * 13 12 10 25 25 H 1.09005 * 117.50115 * 252.50776 * 14 13 12 26 26 H 1.09003 * 117.52020 * 107.48432 * 14 13 12 27 27 H 1.09000 * 113.56499 * 285.72331 * 15 10 9 28 28 H 1.08998 * 113.39453 * 24.68251 * 16 15 10 29 29 H 1.08999 * 113.39869 * 254.47543 * 16 15 10 30 30 H 1.08996 * 113.39124 * 143.04979 * 18 17 16 31 31 H 1.09001 * 113.39079 * 273.25136 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 1 2.9292 -3.5554 -0.8414 12 6 3.0399 -3.6537 1.3078 13 6 4.5276 -3.3053 1.2279 14 6 4.0930 -4.7465 1.5014 15 6 1.4843 -4.9836 -0.1252 16 6 0.6438 -5.1165 -1.4011 17 8 1.0686 -6.4827 -1.4919 18 6 2.2711 -6.1102 -0.8061 19 1 -0.4849 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 2.4916 -3.3214 2.1893 23 1 4.9400 -3.0818 0.2440 24 1 4.9582 -2.7436 2.0568 25 1 4.2377 -5.1330 2.5103 26 1 4.2194 -5.4719 0.6976 27 1 0.9696 -5.2788 0.7892 28 1 1.0027 -4.4962 -2.2224 29 1 -0.4267 -5.0069 -1.2277 30 1 2.6264 -6.8711 -0.1113 31 1 3.0550 -5.7493 -1.4720 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260425046.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:20 Heat of formation + Delta-G solvation = -4.539406 kcal Electronic energy + Delta-G solvation = -12652.330385 eV Core-core repulsion = 10514.376962 eV Total energy + Delta-G solvation = -2137.953423 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.43603 -37.08899 -33.33415 -31.57035 -28.33719 -25.82595 -24.87412 -21.84298 -21.74138 -20.08496 -19.22286 -16.43034 -16.01458 -15.25147 -15.04669 -14.66562 -14.16311 -13.92985 -12.43032 -12.20070 -12.09291 -11.70063 -11.36013 -11.10127 -10.96144 -10.81390 -10.55023 -10.23772 -9.99734 -9.74433 -9.44973 -9.35727 -8.96103 -8.78397 -8.33994 -5.98624 -3.99452 3.31823 3.38700 3.41678 4.34501 4.45439 4.47277 4.70990 5.21665 5.36470 5.40254 5.55254 5.57386 5.66451 5.72313 5.93381 6.03100 6.06818 6.22840 6.30016 6.38285 6.46257 6.50650 6.59436 6.68222 7.01989 7.08040 7.66795 7.78891 8.00768 8.44498 9.07225 9.64234 11.12772 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.036863 B = 0.011058 C = 0.009011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.388616 B = 2531.571250 C = 3106.494323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.046 4.046 11 H 0.061 0.939 12 C -0.108 4.108 13 C -0.174 4.174 14 C -0.203 4.203 15 C -0.140 4.140 16 C 0.035 3.965 17 O -0.385 6.385 18 C 0.031 3.969 19 H 0.259 0.741 20 H 0.018 0.982 21 H 0.017 0.983 22 H 0.100 0.900 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.170 -8.149 0.782 9.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.065 4.065 11 H 0.079 0.921 12 C -0.127 4.127 13 C -0.211 4.211 14 C -0.240 4.240 15 C -0.158 4.158 16 C -0.042 4.042 17 O -0.304 6.304 18 C -0.046 4.046 19 H 0.069 0.931 20 H 0.037 0.963 21 H 0.035 0.965 22 H 0.118 0.882 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.118 0.882 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.906 -8.283 0.670 9.650 hybrid contribution 0.525 1.190 0.103 1.305 sum 5.431 -7.093 0.773 8.967 Atomic orbital electron populations 1.69960 1.06000 1.26461 1.51269 1.25003 0.94775 0.99104 0.95603 0.86663 0.79922 0.83814 0.78024 1.20806 1.21371 1.19905 1.21239 0.93150 0.90713 1.49809 0.92399 1.19109 0.93367 0.90809 0.97346 1.20887 0.97196 0.93832 0.94568 0.92112 1.22160 0.90397 1.00146 0.99954 1.22828 0.99000 0.97019 1.02253 1.23005 1.07187 0.92273 1.01493 1.23896 0.97133 0.96465 0.98338 1.23710 1.00722 0.82223 0.97506 1.89766 1.33481 1.26084 1.81021 1.23798 0.89429 0.96891 0.94511 0.93115 0.96348 0.96457 0.88211 0.89341 0.89714 0.89906 0.89561 0.88214 0.90087 0.89879 0.90440 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.80 8.61 -34.44 -0.30 -14.10 16 8 H 0.06 1.53 7.34 -52.49 -0.39 1.14 16 9 C 0.03 0.75 4.32 -27.88 -0.12 0.63 16 10 C -0.05 -0.89 1.82 -90.62 -0.17 -1.06 16 11 H 0.06 1.19 7.63 -51.93 -0.40 0.79 16 12 C -0.11 -1.94 4.51 -90.62 -0.41 -2.35 16 13 C -0.17 -2.87 9.90 -26.73 -0.26 -3.13 16 14 C -0.20 -2.97 9.78 -26.73 -0.26 -3.23 16 15 C -0.14 -2.35 3.38 -90.25 -0.31 -2.66 16 16 C 0.03 0.59 7.34 24.60 0.18 0.77 16 17 O -0.38 -6.67 12.74 -35.23 -0.45 -7.12 16 18 C 0.03 0.46 6.80 24.60 0.17 0.63 16 19 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 20 H 0.02 0.47 7.34 -51.93 -0.38 0.09 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.10 1.91 8.11 -51.93 -0.42 1.49 16 23 H 0.09 1.46 8.05 -51.93 -0.42 1.05 16 24 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 25 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.09 1.17 6.55 -51.93 -0.34 0.83 16 27 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 28 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.08 1.03 7.97 -51.93 -0.41 0.61 16 31 H 0.07 1.05 7.92 -51.93 -0.41 0.64 16 LS Contribution 256.86 15.07 3.87 3.87 Total: -1.00 -28.95 256.86 -7.27 -36.22 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.84 Total: -0.62 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -1.57 Total: -23.03 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.74 Total: -25.72 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.45 Total: -7.12 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.95 -7.27 -36.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260425046.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.683 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds