Wall clock time and date at job start Mon Mar 30 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00450 * 2 1 4 4 H 1.48493 * 109.47459 * 269.99906 * 3 2 1 5 5 H 1.48502 * 109.47268 * 30.00165 * 3 2 1 6 6 H 1.48505 * 109.47360 * 149.99664 * 3 2 1 7 7 C 1.37879 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00650 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99909 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47354 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.46802 * 304.99513 * 10 9 7 12 12 C 1.52995 * 109.47048 * 64.99566 * 10 9 7 13 13 C 1.53002 * 117.50076 * 248.62307 * 12 10 9 14 14 C 1.52996 * 59.99938 * 252.51275 * 13 12 10 15 15 C 1.52995 * 109.47284 * 184.99976 * 10 9 7 16 16 C 1.53365 * 114.56665 * 59.99527 * 15 10 9 17 17 O 1.43355 * 88.44735 * 139.58136 * 16 15 10 18 18 C 1.43354 * 88.31830 * 331.85044 * 17 16 15 19 19 H 0.97003 * 119.99446 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47395 * 59.99565 * 9 7 2 21 21 H 1.09002 * 109.46828 * 299.99826 * 9 7 2 22 22 H 1.08999 * 115.55157 * 34.33441 * 12 10 9 23 23 H 1.08995 * 117.49516 * 0.02562 * 13 12 10 24 24 H 1.08996 * 117.49516 * 145.02574 * 13 12 10 25 25 H 1.09005 * 117.50115 * 252.50776 * 14 13 12 26 26 H 1.09003 * 117.52020 * 107.48432 * 14 13 12 27 27 H 1.09000 * 113.56499 * 285.72331 * 15 10 9 28 28 H 1.08998 * 113.39453 * 24.68251 * 16 15 10 29 29 H 1.08999 * 113.39869 * 254.47543 * 16 15 10 30 30 H 1.08996 * 113.39124 * 143.04979 * 18 17 16 31 31 H 1.09001 * 113.39079 * 273.25136 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 1 2.9292 -3.5554 -0.8414 12 6 3.0399 -3.6537 1.3078 13 6 4.5276 -3.3053 1.2279 14 6 4.0930 -4.7465 1.5014 15 6 1.4843 -4.9836 -0.1252 16 6 0.6438 -5.1165 -1.4011 17 8 1.0686 -6.4827 -1.4919 18 6 2.2711 -6.1102 -0.8061 19 1 -0.4849 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 2.4916 -3.3214 2.1893 23 1 4.9400 -3.0818 0.2440 24 1 4.9582 -2.7436 2.0568 25 1 4.2377 -5.1330 2.5103 26 1 4.2194 -5.4719 0.6976 27 1 0.9696 -5.2788 0.7892 28 1 1.0027 -4.4962 -2.2224 29 1 -0.4267 -5.0069 -1.2277 30 1 2.6264 -6.8711 -0.1113 31 1 3.0550 -5.7493 -1.4720 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260425046.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:20 Heat of formation + Delta-G solvation = -21.461557 kcal Electronic energy + Delta-G solvation = -12653.064184 eV Core-core repulsion = 10514.376962 eV Total energy + Delta-G solvation = -2138.687222 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.77870 -38.47783 -35.25175 -33.28605 -30.03959 -27.12336 -26.66994 -23.59180 -23.04117 -21.43556 -20.69491 -18.44834 -17.29228 -16.82066 -16.49632 -16.32056 -15.69857 -15.35382 -14.32143 -13.71203 -13.48475 -13.38127 -13.11547 -12.70640 -12.62168 -12.30919 -12.16615 -11.96660 -11.43887 -11.37703 -11.12094 -10.74151 -10.61066 -10.44933 -10.31929 -8.13534 -6.20815 1.40954 1.41408 1.51912 2.44092 3.03963 3.16591 3.21509 3.36596 3.86478 4.10866 4.24828 4.29777 4.41948 4.43742 4.58662 4.67497 4.82725 4.89324 4.90810 5.07580 5.10068 5.16070 5.24990 5.36207 5.40990 5.49236 5.63924 5.83214 5.92500 6.34868 6.95717 7.47013 8.98237 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.036863 B = 0.011058 C = 0.009011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.388616 B = 2531.571250 C = 3106.494323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.063 0.937 9 C 0.036 3.964 10 C -0.032 4.032 11 H 0.059 0.941 12 C -0.138 4.138 13 C -0.182 4.182 14 C -0.165 4.165 15 C -0.140 4.140 16 C 0.031 3.969 17 O -0.396 6.396 18 C 0.040 3.960 19 H 0.260 0.740 20 H -0.005 1.005 21 H -0.012 1.012 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.068 -8.981 0.966 11.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.557 4.557 8 H 0.081 0.919 9 C -0.001 4.001 10 C -0.050 4.050 11 H 0.077 0.923 12 C -0.156 4.156 13 C -0.219 4.219 14 C -0.202 4.202 15 C -0.159 4.159 16 C -0.045 4.045 17 O -0.316 6.316 18 C -0.036 4.036 19 H 0.068 0.932 20 H 0.014 0.986 21 H 0.006 0.994 22 H 0.098 0.902 23 H 0.105 0.895 24 H 0.108 0.892 25 H 0.121 0.879 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.123 0.877 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.823 -9.127 0.854 11.427 hybrid contribution -0.088 1.434 0.053 1.437 sum 6.734 -7.693 0.906 10.264 Atomic orbital electron populations 1.70094 1.07635 1.27290 1.52714 1.25869 0.95587 1.02882 0.95510 0.85621 0.78856 0.79391 0.78253 1.20129 1.21326 1.18778 1.21646 0.93557 0.91855 1.48652 0.91922 1.18981 0.93820 0.92559 0.94753 1.20608 0.96066 0.92901 0.95459 0.92281 1.21992 0.91115 1.04134 0.98393 1.22913 0.97415 0.99019 1.02514 1.23075 1.02558 0.91309 1.03259 1.23840 0.97583 0.96083 0.98384 1.23710 1.00820 0.82388 0.97623 1.89761 1.34623 1.25823 1.81353 1.23882 0.88779 0.96439 0.94493 0.93164 0.98622 0.99357 0.90215 0.89461 0.89243 0.87874 0.87791 0.88065 0.90465 0.90076 0.87744 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.49 13.29 21.45 0.28 -56.21 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.52 -28.35 8.61 25.60 0.22 -28.13 16 8 H 0.06 3.29 7.34 -2.91 -0.02 3.27 16 9 C 0.04 1.80 4.32 29.85 0.13 1.93 16 10 C -0.03 -1.21 1.82 -10.80 -0.02 -1.23 16 11 H 0.06 2.25 7.63 -2.38 -0.02 2.23 16 12 C -0.14 -4.79 4.51 -10.80 -0.05 -4.84 16 13 C -0.18 -5.59 9.90 30.59 0.30 -5.28 16 14 C -0.17 -4.26 9.78 30.59 0.30 -3.96 16 15 C -0.14 -4.56 3.38 -10.55 -0.04 -4.60 16 16 C 0.03 1.05 7.34 63.84 0.47 1.52 16 17 O -0.40 -13.03 12.74 -148.98 -1.90 -14.93 16 18 C 0.04 1.09 6.80 63.84 0.43 1.53 16 19 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 20 H 0.00 -0.25 7.34 -2.39 -0.02 -0.26 16 21 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 22 H 0.08 3.07 8.11 -2.39 -0.02 3.05 16 23 H 0.09 2.70 8.05 -2.39 -0.02 2.68 16 24 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 25 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 26 H 0.10 2.34 6.55 -2.39 -0.02 2.32 16 27 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 28 H 0.08 2.64 8.11 -2.39 -0.02 2.62 16 29 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.10 2.31 7.97 -2.39 -0.02 2.29 16 31 H 0.09 2.15 7.92 -2.39 -0.02 2.13 16 Total: -1.00 -61.96 256.86 3.71 -58.25 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 1.08 Total: 9.50 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 2.21 Total: -42.69 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.28 Total: -56.21 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -1.90 Total: -14.93 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -61.96 3.71 -58.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260425046.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.788 kcal (2) G-P(sol) polarization free energy of solvation -61.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds