Wall clock time and date at job start Mon Mar 30 2020 02:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86807 * 119.99688 * 2 1 4 4 H 1.48496 * 109.46925 * 239.99905 * 3 2 1 5 5 H 1.48502 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46896 * 120.00158 * 3 2 1 7 7 C 1.40304 * 120.00494 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00441 * 179.97438 * 7 2 1 9 9 C 1.40069 * 119.99836 * 359.97438 * 7 2 1 10 10 C 1.35033 * 120.00373 * 188.90931 * 9 7 2 11 11 C 1.50704 * 119.99722 * 6.40818 * 10 9 7 12 12 C 1.52991 * 109.47392 * 126.18556 * 11 10 9 13 13 H 1.08999 * 109.52529 * 54.87423 * 12 11 10 14 14 C 1.53188 * 109.52150 * 174.99697 * 12 11 10 15 15 C 1.53175 * 109.03303 * 176.88604 * 14 12 11 16 16 C 1.53090 * 109.16453 * 303.01681 * 15 14 12 17 17 O 1.42902 * 109.41067 * 57.61576 * 16 15 14 18 18 C 1.42903 * 114.09657 * 298.83254 * 17 16 15 19 19 H 0.96997 * 120.00438 * 0.02562 * 1 2 3 20 20 H 1.08002 * 120.00174 * 8.91623 * 9 7 2 21 21 H 1.07993 * 120.00360 * 186.39399 * 10 9 7 22 22 H 1.09001 * 109.46445 * 246.18675 * 11 10 9 23 23 H 1.09003 * 109.47258 * 6.17927 * 11 10 9 24 24 H 1.09002 * 109.54146 * 296.75744 * 14 12 11 25 25 H 1.09004 * 109.54153 * 57.02012 * 14 12 11 26 26 H 1.08997 * 109.52222 * 62.93030 * 15 14 12 27 27 H 1.09005 * 109.51460 * 183.05295 * 15 14 12 28 28 H 1.08996 * 109.47633 * 177.59499 * 16 15 14 29 29 H 1.08994 * 109.48444 * 297.61868 * 16 15 14 30 30 H 1.08995 * 109.48456 * 301.18309 * 18 17 16 31 31 H 1.09000 * 109.47612 * 181.14204 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0945 1.6965 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0946 1.6965 1.2125 7 6 2.0085 -1.2150 -0.0005 8 1 3.0885 -1.2150 -0.0010 9 6 1.3082 -2.4281 -0.0005 10 6 1.9712 -3.5905 0.1800 11 6 3.4382 -3.5755 0.5249 12 6 3.6724 -4.3978 1.7936 13 1 3.2668 -5.4004 1.6579 14 6 5.1754 -4.4875 2.0753 15 6 5.3932 -5.2457 3.3883 16 6 4.6330 -4.5349 4.5111 17 8 3.2470 -4.4582 4.1717 18 6 2.9787 -3.7198 2.9780 19 1 -0.4851 0.8400 -0.0004 20 1 0.2379 -2.4338 -0.1451 21 1 1.4503 -4.5309 0.0776 22 1 4.0091 -4.0060 -0.2978 23 1 3.7615 -2.5481 0.6929 24 1 5.6679 -5.0191 1.2611 25 1 5.5909 -3.4833 2.1609 26 1 5.0222 -6.2654 3.2859 27 1 6.4572 -5.2671 3.6243 28 1 4.7495 -5.0941 5.4394 29 1 5.0321 -3.5289 4.6402 30 1 3.3560 -2.7031 3.0869 31 1 1.9034 -3.6918 2.8020 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260479800.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:19 Heat of formation + Delta-G solvation = -66.775621 kcal Electronic energy + Delta-G solvation = -12455.773426 eV Core-core repulsion = 10315.121239 eV Total energy + Delta-G solvation = -2140.652187 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.89699 -35.04928 -33.58607 -32.16112 -30.18082 -26.33170 -24.45851 -24.23712 -21.64445 -19.51786 -18.62210 -16.20245 -15.69090 -15.50838 -14.80436 -14.34874 -13.96934 -13.33265 -13.17983 -12.43314 -12.19635 -11.63049 -11.48698 -11.25399 -11.22793 -10.78460 -10.73035 -10.35442 -10.03198 -9.79886 -9.46664 -9.39723 -8.92007 -8.82423 -7.50741 -6.69632 -4.21382 2.99837 3.09880 3.13470 3.93360 4.00918 4.37378 5.13845 5.20540 5.26173 5.47746 5.54870 5.65479 5.87370 5.96839 6.08549 6.20401 6.26362 6.34858 6.62616 6.67668 6.81772 7.00514 7.10437 7.23473 7.30857 7.66187 7.72018 7.93661 8.46179 8.73224 9.17042 9.32283 10.34143 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.044158 B = 0.008784 C = 0.008426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.930152 B = 3187.028601 C = 3322.398182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.464 4.464 8 H 0.074 0.926 9 C 0.051 3.949 10 C -0.423 4.423 11 C -0.034 4.034 12 C -0.111 4.111 13 H 0.064 0.936 14 C -0.120 4.120 15 C -0.154 4.154 16 C 0.061 3.939 17 O -0.392 6.392 18 C 0.074 3.926 19 H 0.280 0.720 20 H 0.076 0.924 21 H 0.063 0.937 22 H 0.025 0.975 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.903 -3.646 5.261 10.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.494 4.494 8 H 0.092 0.908 9 C 0.031 3.969 10 C -0.444 4.444 11 C -0.071 4.071 12 C -0.130 4.130 13 H 0.082 0.918 14 C -0.158 4.158 15 C -0.192 4.192 16 C -0.016 4.016 17 O -0.312 6.312 18 C -0.002 4.002 19 H 0.090 0.910 20 H 0.094 0.906 21 H 0.081 0.919 22 H 0.044 0.956 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.539 -3.556 5.365 9.913 hybrid contribution 0.534 0.897 -0.242 1.071 sum 8.072 -2.659 5.124 9.924 Atomic orbital electron populations 1.69564 1.07654 1.29378 1.38446 1.26117 0.94754 1.01590 0.91882 0.86396 0.80036 0.80506 0.79875 1.19012 1.20475 1.18998 1.19639 0.94661 0.90724 1.44404 0.90758 1.19865 0.96171 0.92178 0.88717 1.21897 0.95201 0.95378 1.31973 1.19989 0.96489 0.98206 0.92449 1.21779 0.93335 1.00511 0.97389 0.91798 1.21708 0.97714 0.99998 0.96331 1.22187 0.99932 1.00429 0.96673 1.22461 0.83036 0.99202 0.96934 1.87891 1.23384 1.75675 1.44202 1.22669 1.01853 0.93286 0.82395 0.90972 0.90625 0.91906 0.95604 0.92020 0.92155 0.92211 0.91529 0.91791 0.89886 0.93742 0.93516 0.87888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.20 12.88 55.57 0.72 -21.49 16 2 C 0.07 1.89 5.50 -17.26 -0.09 1.80 16 3 Si 0.91 19.41 29.56 -169.99 -5.03 14.39 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.46 -12.58 8.48 -38.12 -0.32 -12.91 16 8 H 0.07 1.96 5.77 -52.48 -0.30 1.66 16 9 C 0.05 1.39 9.37 -40.03 -0.38 1.01 16 10 C -0.42 -10.56 8.72 -35.45 -0.31 -10.87 16 11 C -0.03 -0.75 4.89 -27.89 -0.14 -0.89 16 12 C -0.11 -2.11 2.38 -90.48 -0.22 -2.33 16 13 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 14 C -0.12 -1.89 5.31 -26.54 -0.14 -2.03 16 15 C -0.15 -2.11 6.14 -26.59 -0.16 -2.27 16 16 C 0.06 0.88 6.84 37.20 0.25 1.13 16 17 O -0.39 -7.22 10.77 -35.23 -0.38 -7.59 16 18 C 0.07 1.45 5.90 37.21 0.22 1.67 16 19 H 0.28 6.90 8.29 -40.82 -0.34 6.56 16 20 H 0.08 2.17 7.46 -52.49 -0.39 1.78 16 21 H 0.06 1.56 8.06 -52.49 -0.42 1.13 16 22 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.06 1.42 5.51 -51.93 -0.29 1.13 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 2.21 7.48 -51.93 -0.39 1.82 16 LS Contribution 253.91 15.07 3.83 3.83 Total: -1.00 -27.41 253.91 -6.88 -34.29 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -4.73 Total: 2.27 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: -1.28 Total: -25.68 kcal Atomic # 7 Polarization: -22.20 SS G_CDS: 0.72 Total: -21.49 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.38 Total: -7.59 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.41 -6.88 -34.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260479800.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.491 kcal (2) G-P(sol) polarization free energy of solvation -27.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds